SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14687

Length: 254 nt

UniGene Fasta

>biog3_v1.0_unigene14687
CTGTTGTCCAGAGACTGGGTTTGAGTGGGAAAGATGGATTGGAGTCTTTCCACTTGTGATGGTTGGTGGTGTCCTTGAGAACAATGAGGGATGGGACATAGGTGAAGAAGTAATTAGTTGTATTTCCAAAGACTTTCCAGGCGTGCTTCCAATTCGGCCAAAGCTGGGACCAGCGATAGGTGCTGCGATGTTAGCATGGAACTTCTATACGAAGGCCTCTTCAGAGGAAAGTATACAAAGACAGGTGATATGAG

Ace file of the UniGene biog3_v1.0_unigene14687

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2636	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase [Oryza sativa Japonica Group] gb\|EAZ02771.1\| hypothetical protein OsI_24894 [Oryza sativa Indica Group] gb\|EAZ38693.1\| hypothetical protein OsJ_23091 [Oryza sativa Japonica Group]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	n-acetyl-d-glucosamine kinase	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	0.0	80%
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, BadF/BadG/BcrA/BcrD type	IPR002731	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN60

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 30 aas, your sequence is shorter than subject: 84 - 387

Fln protein: CCPETGFEWERWIGVFPLVMVGGVLENNEGWDIGEEVISCISKDFPGVLPIRPKLGPAIGAAMLAWNFYTKASSEESIQRQVI*

Protein Length: 85

Fln nts: CTGTTGTCCAGAGACTGGGTTTGAGTGGGAAAGATGGATTGGAGTCTTTCCACTTGTGATGGTTGGTGGTGTCCTTGAGAACAATGAGGGATGGGACATAGGTGAAGAAGTAATTAGTTGTATTTCCAAAGACTTTCCAGGCGTGCTTCCAATTCGGCCAAAGCTGGGACCAGCGATAGGTGCTGCGATGTTAGCATGGAACTTCTATACGAAGGCCTCTTCAGAGGAAAGTATACAAAGACAGGTGATATGAG

Fln Alignment:

biogeco3_mira_c8399___FPLVMVGGVLENNEGWDIGEEVISCISKDFPGVLPIRPKLGPAIGAAMLAWNFYTKASSEESIQRQV
A9NN60__________________FPLVMVGGVLETNEGWDIGEEVINCISKDFPGILPIRPKVEPAIGAAMLAWNFYMKVSSEESIKDRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain