SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14672

Length: 211 nt

UniGene Fasta

>biog3_v1.0_unigene14672
CTATGGAAAACAGGGGAGATACGATAAAGTCAAATCTCTGTTTGAAGCGATGAAGGCAGAGTCTATCCCTCCTAATGTGCTAACTTACTCTACTTTAATAGATGTATATTCTAAAGGAGGATTGCAAGCTGAGGCAATGCATATTCTGAATGAGTTTGAACAGACTGGATTAGAGCCAGATGTGGTTCTTTATAGTGCTTTGATTGATGCT

Ace file of the UniGene biog3_v1.0_unigene14672

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1864	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	genomes uncoupled 1 protein [Arabidopsis thaliana] sp\|Q9SIC9.1\|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb\|AAD26479.1\| unknown protein [Arabidopsis thaliana] gb\|AEC08542.1\| genomes un	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	pentatricopeptide repeat-containing protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	71%
Blast2go	chloroplast-nucleus signaling pathway	GO:0010019	Biological Process	71%
Blast2go	DNA binding	GO:0003677	Molecular Function	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXP3

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 70 - 278

Fln protein: YGKQGRYDKVKSLFEAMKAESIPPNVLTYSTLIDVYSKGGLQAEAMHILNEFEQTGLEPDVVLYSALIDA

Protein Length: 71

Fln nts: CTATGGAAAACAGGGGAGATACGATAAAGTCAAATCTCTGTTTGAAGCGATGAAGGCAGAGTCTATCCCTCCTAATGTGCTAACTTACTCTACTTTAATAGATGTATATTCTAAAGGAGGATTGCAAGCTGAGGCAATGCATATTCTGAATGAGTTTGAACAGACTGGATTAGAGCCAGATGTGGTTCTTTATAGTGCTTTGATTGATGCT

Fln Alignment:

biogeco3_mira_c8329___YGKQGRYDKVKSLFEAMKAESIPPNVLTYSTLIDVYSKGGLQAEAMHILNEFEQTGLEPDVVLYSALIDA
A9NXP3__________________YGKAGFFQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSLICA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
11	33	66			0.997452
12	66			33	0.997452
14			66	33	0.997453
76		33		66	0.997452
80		66		33	0.997452
163		33	66		0.997452
167	33		66		0.997459
168		33	66		0.997459
170		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain