SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14670

Length: 1226 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene14670 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8127	1/33
SustainPine v2.0	sp_v2.0_unigene15309	2/33
SustainPine v2.0	sp_v2.0_unigene15667	29/33
SustainPine v2.0	sp_v2.0_unigene16400	1/33

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg: Overlapping hits, possible frame ERROR between 293 and 292, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 266 - 286

Fln protein: CCCSLIVGSQCAAFNDFFYPSWAIDHVMYEGELLKLKLDNTSGAGFASKSTYIFGxxVNVQIKLVPGDSAGTVTAFYMSSQGDKHDEFDFEFLGNTSGEPYAVQTNVYSKGVGKREQRIFLWFDPTTDFHSYSFLWNRQQVVFLVDDVPIRLFQNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDACDYSLKTTCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSARFPTPPPECSA*

Protein Length: 267

Fln nts: CGGGATTGTGGAGCTCTCGTTTTAGATCTTTGCTACACACTCTTCTGTTCTCTTCAGTTCAGTCTTCAGGATGGGATTGGTAGGTCGTATGATGCACTGGCCCTGTGTTCTCGGTAGCATTGTAGTGTTGTTGCAGCCTGATAGTGGGCTCTCAATGTGCAGCCTTCAATGATTTCTTCTACCCCAGTTGGGCAATTGACCATGTTATGTACGAAGGGGAGTTGCTCAAACTTAAGCTCGACAACACTTCTGGTGCAGGGTTTGCCTCCAAGAGCACATACATATTCGGAxxxxxxGTGAATGTGCAGATTAAGCTCGTTCCTGGCGACTCTGCTGGCACCGTTACTGCTTTCTATATGTCTTCCCAAGGGGATAAGCACGATGAATTCGACTTTGAATTTTTGGGGAACACTTCTGGGGAGCCGTACGCTGTGCAGACGAATGTTTATTCTAAGGGGGTTGGCAAGCGCGAGCAGCGGATTTTCTTATGGTTCGACCCAACCACGGATTTCCATTCCTATTCCTTTCTCTGGAACCGCCAGCAAGTTGTTTTCTTGGTGGACGATGTGCCCATACGGCTATTTCAGAACAATGAGAAAGTGGGAGTCCCGTATCCTCAAACTCAACCCATGGGCGTCTACTCCTCAATATGGAACGCAGACGACTGGGCTACTCAAGGTGGCCTCGTCAAGACCGATTGGAGCCACGCGCCTTTCGTTTCCACATACACAAATTTCAGCATTGATGCCTGTGATTATTCCTTGAAAACGACCTGCTCTTCGTGGTGGGATGAGCCTGCTTACGCTTCGCTCGATGCAAAGCAGAGGCTGAAACTGAAGTGGGTGCAAGAGAAATACATGACTTACGATTACTGCAAAGATTCAGCCAGGTTTCCCACGCCTCCACCAGAATGTAGTGCTTGAAGTGGGGTCTCTTAGCTTGAACTCACAGAAAGATCTCATTATCACATATTTCATTCTCCCTTTATGAGGTTACCACATTTCTGTCAGCTTGGATGGTGGAAATTACTGCCGGAGGACACGAAAGTTTATGTTTTTGTGGCGGTGGAAAAGAGAGAACAGGGCCTCTCTGTCTCTCAGCCTTTGCATCGTCACTGAAGAATTTTGAAGTGCCGACCAGGGCACAAAGGGACTTGTAAAGTGCCATCCACGACACAATATTTACCTATTTTGAGGCATTTCATGGTTAAAAATTGTGTAGCGTATTT

Fln Alignment:

biogeco3_mira_c8324___CSLIVGSQCAAFNDFFYPSWAIDHVMYEGELLKLKLDNTSGAGFASKSTYIFGxVNVQIKLVPGDSAGTVTAFYMSSQGDKHDEFDFEFLGNTSGEPYAVQTNVYSKGVGKREQRIFLWFDPTTDFHSYSFLWNRQQVVFLVDDVPIRLFQNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDACDYSLKTTCSSWWDEPAYASLDAKQRLKLKWVQEKYMTYDYCKDSARFPTPPPECS
D5A9T0__________________CSLVVGSQCAAFNDFFYPSWALDHVMYEGELLKLRLDNTSGAGFASKSTYIFGxVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYAVQTNVFSKGVGKREQRIFLWFDPTADFHSYSFLWNRQQVVFFVDDVPIRVFLNNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYKNFSIDACEYPSTTSCSSWWDQPAYASLDAKQRLKLKWVQEKYMTYDYCRDSGRFATPPAECA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain