SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14649

Length: 317 nt

UniGene Fasta

>biog3_v1.0_unigene14649
AATGTACCAAAGCCTGAACCACAAAATGGTGTTCTCTTCCTCTGCCCCCTGCTACTTGTGTACCCAGTTTTGCGATTCTCTTCAAAGGAAACTAATTTTGGGTTCCTTTACAGAAGGATTGGTTAAGCCTCAGCCTGTGTGCTACCTTAATGGCAACGCCTTCATTTTTAGAAGATGCAATGGCTTCCAGATCCGAAGTAGATTTCAAAGGCTGAAGCCGATGAGCTCCACAGATATGAGAGCTCATAATCACACAATTTGGTTACAACAGGGCAGCTGGAGCCACTAGATTTGACGGAGGAGAATGTTAATACATT

Ace file of the UniGene biog3_v1.0_unigene14649

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8088	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	WS00738.B21_L24 WS-PS-N-A-8 Picea glauca cDNA clone WS00738_L24 3, mRNA sequence.	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	87%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	87%
Blast2go	iron ion binding	GO:0005506	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 81 aas, your sequence is shorter than subject: 96 - 182

Fln protein: MYQSLNHKMVFSSSAPCYLCTQFCDSLQRKLILGSFTEGLVKPQPVCYLNGNAFIFRRCNGFQIRSRFQRLKPMSSTDMRAHNHTIWLQQGSWSH*

Protein Length: 97

Fln nts: A_-_ATGTACCAAAGCCTGAACCACAAAATGGTGTTCTCTTCCTCTGCCCCCTGCTACTTGTGTACCCAGTTTTGCGATTCTCTTCAAAGGAAACTAATTTTGGGTTCCTTTACAGAAGGATTGGTTAAGCCTCAGCCTGTGTGCTACCTTAATGGCAACGCCTTCATTTTTAGAAGATGCAATGGCTTCCAGATCCGAAGTAGATTTCAAAGGCTGAAGCCGATGAGCTCCACAGATATGAGAGCTCATAATCACACAATTTGGTTACAACAGGGCAGCTGGAGCCACTAGATTTGACGGAGGAGAATGTTAATACATT

Fln Alignment:

biogeco3_mira_c8271___MVFSSSAPCYLCTQFCDSLQRKLILGSFTEGLVKPQP----VCYLNGNAFIFRRCNGFQIRSRFQRLKPMSSTDMRAHNHTIWLQQG
A9NNL6__________________MVFASSASRYSCTQVSVPLHRKLKLGSSTQGLLQPQPQPQPVNYLNGKAFIIRRCSGFHIRSRFPRKKPMSSTDIRAHNHAILVTTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain