SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14622

Length: 273 nt

UniGene Fasta

>biog3_v1.0_unigene14622
AATGTGGTCATGGAATTTGATTTGAATGAGTATGTGCACGCCAAGGCAGTTGCAGTGAATGAGTGTCTTGACAAGGCTGTCGCGCTTCGTTTTCCTGAAAAGTTACATGAATCCATGCGCTATTCTGTTCTGTCCGGGGGCAAGCGAGTTCGTCCTATTCTGTGTATCGCTGCATGTGAGCTTGTGGGAGGAACCCAAGGGCTTGCCATGCCGGTTGCCTGTGCAATAGAGATGATTCATGTAATGTCTCTCCTACATGATGACTTGCCCTGC

Ace file of the UniGene biog3_v1.0_unigene14622

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5504	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Geranyl diphosphate synthase n=1 Tax=Abies grandis RepID=Q8LKJ2_ABIGR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	geranylgeranyl diphosphate synthase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Farnesyltranstransferase.	EC:2.5.1.29	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Terpenoid backbone biosynthesis	00900		84%
Blast2go	Biosynthesis of terpenoids and steroids	01062		84%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		84%
Blast2go	Biosynthesis of plant hormones	01070		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Biosynthesis of secondary metabolites	01110		84%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	84%
Blast2go	Dimethylallyltranstransferase.	EC:2.5.1.1	-	84%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	84%
Blast2go	Biosynthesis of terpenoids and steroids	01062	84%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	isoprenoid biosynthetic process	GO:0008299	Biological Process	84%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	farnesyltranstransferase activity	GO:0004311	Molecular Function	84%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	84%
Blast2go	dimethylallyltranstransferase activity	GO:0004161	Molecular Function	84%

Source	InterPros	Term	Type	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Terpenoid synthase	IPR008949	-	-
Sma3	Polyprenyl synthetase-related	IPR017446	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR55

Fln msg: Distance to subject end: 209 aas, your sequence is shorter than subject: 91 - 382

Fln protein: NVVMEFDLNEYVHAKAVAVNECLDKAVALRFPEKLHESMRYSVLSGGKRVRPILCIAACELVGGTQGLAMPVACAIEMIHVMSLLHDDLPC

Protein Length: 92

Fln nts: AATGTGGTCATGGAATTTGATTTGAATGAGTATGTGCACGCCAAGGCAGTTGCAGTGAATGAGTGTCTTGACAAGGCTGTCGCGCTTCGTTTTCCTGAAAAGTTACATGAATCCATGCGCTATTCTGTTCTGTCCGGGGGCAAGCGAGTTCGTCCTATTCTGTGTATCGCTGCATGTGAGCTTGTGGGAGGAACCCAAGGGCTTGCCATGCCGGTTGCCTGTGCAATAGAGATGATTCATGTAATGTCTCTCCTACATGATGACTTGCCCTGC

Fln Alignment:

biogeco3_mira_c8164___VMEFDLNEYVHAKAVAVNECLDKAVALRFPEKLHESMRYSVLSGGKRVRPILCIAACELVGGTQGLAMPVACAIEMIHVMSLLHDDLPC
C0PR55__________________VVEFDFNKYMHAKAISVNQALDRAVPLRFPQKLHESMRYSILSGGKRVRPVLCIAACELVGGTEELAMPIACAIEMIHVMTLLHDDMPC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
106	33	66			0.997453
135		66		33	0.997454
141		66		33	0.997452
200	33		66		0.997452
204		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain