SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14533

Length: 243 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14533
GAGGTGTTCTTCAAAACATTTCGAGCAGCATTGTAGCACTCGTAACAGAGCTAGGTGCCCATCACTTGGATTTGCGTGCGGCAACGGAAAATGATCCAATTTGGCTAGTAGAGCAACGAAATGCGGAAATTCAAATTATAAATAATTGGATGAATGAATACTATCAAAACATAGGAATTTATACCTCTGAAATTTTGGGCAAGAATGAGTACTATCAAGACAAAGGAATTTATGCTACTGAAA

Ace file of the UniGene biog3_v1.0_unigene14533 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10862	2/4
SustainPine v2.0	sp_v2.0_unigene29817	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase S28 family protein [Arabidopsis thaliana] gb\|ABF57288.1\| At5g65760 [Arabidopsis thaliana] dbj\|BAF00060.1\| lysosomal Pro-X carboxypeptidase [Arabidopsis thaliana] gb\|AED98102.1\| Serine carboxypeptidase S28 family protein [Arabidopsi	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	serine carboxypeptidase s28 family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	78%
Blast2go	carboxypeptidase activity	GO:0004180	Molecular Function	78%
Blast2go	vacuole	GO:0005773	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S28	IPR008758	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: STOP codon was not found. Distance to subject end: 16 aas, your sequence is shorter than subject: 80 - 509

Fln protein: GVLQNISSSIVALVTELGAHHLDLRAATENDPIWLVEQRNAEIQIINNWMNEYYQNIGIYTSEILGKNEYYQDKGIYATE

Protein Length: 81

Fln nts: GAGGTGTTCTTCAAAACATTTCGAGCAGCATTGTAGCACTCGTAACAGAGCTAGGTGCCCATCACTTGGATTTGCGTGCGGCAACGGAAAATGATCCAATTTGGCTAGTAGAGCAACGAAATGCGGAAATTCAAATTATAAATAATTGGATGAATGAATACTATCAAAACATAGGAATTTATACCTCTGAAATTTTGGGCAAGAATGAGTACTATCAAGACAAAGGAATTTATGCTACTGAAA

Fln Alignment:

biogeco3_mira_c7864___GVLQNISSSIVALVTELGAHHLDLRAATENDPIWLVEQRNAEIQIINNWMNEYYQNIGIYTSEI
B8LPX2__________________GVLQNISNSIVALVTELGAHHLDLRAATENDPLWLVEQRNAEMKIINKWMNEYYQDKGIYTFEI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
136	33			66	0.997458
139		66	33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain