SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14528

Length: 808 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene14528

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22397	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	arginine serine-rich splicing	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQY2

Fln msg: Overlapping hits, possible frame ERROR between 414 and 396, Distance to subject end: 55 aas, atg_distance in limit (1-15): atg_distance = 8, W2: There is no M at the beginning, your sequence is shorter than subject: 269 - 331

Fln protein: TLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGNRLRVELAHGGRGQSSTNDRYSSYSSAGGGRSGGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDxxxxxxxxDSSGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRGYIRVKEYVSKRSISRSPSRSYSHSRSRSVSRSRSRSRNRSRSRTPIGSRSRSRSRSISHSKSPKHKAPARSISKSRSRSPSQPRPRPRRHSLST

Protein Length: 270

Fln nts: ACATTAT_-_ATGTTGGGAATCTACCTGGTGATATCAGGGAAAGGGAAGTTGAAGACCTATTTTACAAGTATGGACCTATTGTTGATATTGATCTGAAGATTCCTCCCAGGCCTCCAGGTTATTGTTTTATTGAGTTTGAGGATGCTCGTGATGCAGAGGATGCTATTCGTGGTCGTGATGGGTATAACTTTGATGGCAATCGTTTACGAGTTGAGCTTGCCCATGGTGGTCGGGGACAATCTTCAACTAATGATCGTTATAGTAGTTACAGCAGTGCTGGAGGGGGTCGCAGTGGAGGAGTGTCTCGACGTTCTGAATATCGCGTCCTTGTTACTGGCCTACCATCATCGGCGTCATGGCAGGATCTAAAGGACCATATGCGGCGAGCTGGTGATxxxxxxxxxxxxxxxxxxxxxxxxGATAGCAGTGGTACAACTGGGATTGTGGACTACACGAATTACGATGACATGAAATATGCTATCAGAAAGCTTGATGATTCTGAATTCAGGAATGCATTTTCCCGGGGTTATATCCGGGTCAAGGAGTATGTATCCAAGAGAAGCATTTCAAGGAGCCCCAGCCGCAGTTACAGCCATAGTCGTAGTCGTTCTGTGTCGCGGAGTCGCAGTCGGAGCCGAAACAGAAGCAGAAGCAGGACCCCTATTGGCAGCAGGAGCCGTAGTAGGAGCCGCAGCATCAGCCACAGCAAGTCTCCGAAGCACAAAGCACCGGCTCGTTCAATTTCAAAGTCACGATCTCGTTCTCCATCCCAGCCTCGCCCTCGTCCCAGGCGCCATTCTCTGTCTACATT

Fln Alignment:

biogeco3_mira_c7848___TLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGNRLRVELAHGGRGQSSTNDXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDLKDHMRRAGDVxxxxxxRDSSGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRGYIRVKEYV
B8LQY2__________________TLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGNRLRVELAHGGRGQSSTND-RYSSYSSAGGRSGGVSRRSEYRVLVSGLPSSASWQDLKDHMRRAGDVxxxxxxRDSSGTTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRGYIRVKEYV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
556	66			33	0.997452
557			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain