SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14523

Length: 346 nt

UniGene Fasta

>biog3_v1.0_unigene14523
AATGTTTAGGGATTTTGGAGTGAAGCTGAAGCTTGCACCGGTGTAAGGTCGGTCTTGGAGGGCAAGAGGGTGGTTGTGGTCGATGATTCAATTGTGAGGGGCACAACTTCGTCCAAGATTGTGAGGTTGATTAAAGGAGCAGGGGCTAAAGAAGTTCACATGAGAATTGCTAGTCCTCCTATTATAGGCTCTTGTTACTATGGTGTTGATACACCCAGCAGGGACGAGTTGATTTCCAATAGGTTTAGCATTGAGGACACCAGGAAGTTTATCGGTGCAGATTCACTTGCTTTCTTGCCACTCGAGAGGCTTAGGAAACTGTTGGCGCATGAGGCTCCAACATTCT

Ace file of the UniGene biog3_v1.0_unigene14523

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28099	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Amidophosphoribosyltransferase n=2 Tax=Populus trichocarpa RepID=B9H0Z2_POPTR	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	amidophosphoribosyltransferase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amidophosphoribosyltransferase.	EC:2.4.2.14	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	86%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide biosynthetic process	GO:0006164	Biological Process	86%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	86%
Blast2go	amidophosphoribosyltransferase activity	GO:0004044	Molecular Function	86%
Blast2go	cell wall	GO:0005618	Cellular Component	86%
Blast2go	plastid stroma	GO:0009532	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Amidophosphoribosyl transferase	IPR005854	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMG0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 64 aas, your sequence is shorter than subject: 115 - 610

Fln protein: NV*GFWSEAEACTGVRSVLEGKRVVVVDDSIVRGTTSSKIVRLIKGAGAKEVHMRIASPPIIGSCYYGVDTPSRDELISNRFSIEDTRKFIGADSLAFLPLERLRKLLAHEAPTF

Protein Length: 116

Fln nts: AATGTTTAGGGATTTTGGAGTGAAGCTGAAGCTTGCACCGGTGTAAGGTCGGTCTTGGAGGGCAAGAGGGTGGTTGTGGTCGATGATTCAATTGTGAGGGGCACAACTTCGTCCAAGATTGTGAGGTTGATTAAAGGAGCAGGGGCTAAAGAAGTTCACATGAGAATTGCTAGTCCTCCTATTATAGGCTCTTGTTACTATGGTGTTGATACACCCAGCAGGGACGAGTTGATTTCCAATAGGTTTAGCATTGAGGACACCAGGAAGTTTATCGGTGCAGATTCACTTGCTTTCTTGCCACTCGAGAGGCTTAGGAAACTGTTGGCGCATGAGGCTCCAACATTCT

Fln Alignment:

biogeco3_mira_c7828___VRSVLEGKRVVVVDDSIVRGTTSSKIVRLIKGAGAKEVHMRIASPPIIGSCYYGVDTPSRDELISNRFSIEDTRKFIGADSLAFLPLERLRKLLAHEAPTF
B8LMG0__________________VHAVLEGKRVVVVDDSIVRGTTSSKIVRLIRDAGAREVHVRIASPPIIGSCYYGVDTPSREQLISHKMTVEQTRKFIGADSLAFLPLARLRRMLGEEAPSY

SNPs (tot: 3)

Position	A %	G %	T %	Probability
165	33	66		0.997452
166	66		33	0.997452
167	66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain