SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14474

Length: 251 nt

UniGene Fasta

>biog3_v1.0_unigene14474
AATGTTGGATCCTTGGCCTGGTCGGTCGCCTCGGCTTTCGCTTACTTTTATATGGTGTCTGCGTGGGGAGGTTATATTTTCATCATCAATTTAATTCCTATTTATGTCGTGGTGCTTCTGGTGACTGGGAGATATTCATTGCGATTGTACATTGCATACAATTGCATGTACATCCTGGGAATGCTTCTTGCGATGCAGATCCGATTTGTAGGCTTTCAGCATGTGCAGTCTGGCGAGCACATGGCTGCCAT

Ace file of the UniGene biog3_v1.0_unigene14474

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8681	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis thaliana] gb\|AAG12524.1\|AC015446_5 Putative integral membrane protein [Arabidopsis thaliana] gb\|AEE31675.1\| dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabido	-	-	78%
FL-Next	tr=Oligosaccharyl transferase, putative; Ricinus communis (Castor bean).	-	-	89%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	90%
Blast2go	Various types of N-glycan biosynthesis	00513	90%
Blast2go	Metabolic pathways	01100	90%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	90%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	90%
Blast2go	plastid	GO:0009536	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligosaccharyl transferase, STT3 subunit	IPR003674	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RL89

Fln msg: Distance to subject end: 462 aas, your sequence is shorter than subject: 83 - 752

Fln protein: NVGSLAWSVASAFAYFYMVSAWGGYIFIINLIPIYVVVLLVTGRYSLRLYIAYNCMYILGMLLAMQIRFVGFQHVQSGEHMAA

Protein Length: 84

Fln nts: AATGTTGGATCCTTGGCCTGGTCGGTCGCCTCGGCTTTCGCTTACTTTTATATGGTGTCTGCGTGGGGAGGTTATATTTTCATCATCAATTTAATTCCTATTTATGTCGTGGTGCTTCTGGTGACTGGGAGATATTCATTGCGATTGTACATTGCATACAATTGCATGTACATCCTGGGAATGCTTCTTGCGATGCAGATCCGATTTGTAGGCTTTCAGCATGTGCAGTCTGGCGAGCACATGGCTGCCAT

Fln Alignment:

biogeco3_mira_c7678___NVGSLAWSVASAFAYFYMVSAWGGYIFIINLIPIYVVVLLVTGRYSLRLYIAYNCMYILGMLLAMQIRFVGFQHVQSGEHMAA
B9RL89__________________NTGSLAWSLASAFGYFYMVSAWGGYVFIINLIPLYVLVLLITGRYSLRLYVAYNCMYVLGMLLAMQIRFVGFQHVQSGEHMAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain