SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14464

Length: 304 nt

UniGene Fasta

>biog3_v1.0_unigene14464
AATGTAATCAGTTTCGCCTGGCAGCCAGAAATGCCATGGCAGCAGGGTTCGACGGAGTAGAAATCCACTCGGCTCATGGATACCTAATAGACCAGTTTCTGAAAGACGGAATCAATGACCGCACAGACGAATATGGAGGCTCCATCGAAAATAGATGCCGATTCGCCATCGAAATCCTGGAAGCCGTGAGTGCAGAAATAGGTGGAGGCAGGACAGCAATAAGGCTTTCCCCCATCATAGACCACATGGGCGCCACAGATTCAAACCCTGTGGCCCTCGGGCTCTACATGGTGGAACAGCTCAA

Ace file of the UniGene biog3_v1.0_unigene14464

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4468	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	12-oxophytodienoate reductase 7 n=3 Tax=BEP clade RepID=OPR7_ORYSJ	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	12-oxophytodienoate reductase 3	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	12-oxophytodienoate reductase.	EC:1.3.1.42	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	72%
Blast2go	Biosynthesis of plant hormones	01070	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	72%
Blast2go	response to wounding	GO:0009611	Biological Process	72%
Blast2go	response to ozone	GO:0010193	Biological Process	72%
Blast2go	response to fungus	GO:0009620	Biological Process	72%
Blast2go	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	72%
Blast2go	peroxisome	GO:0005777	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 100 - 376

Fln protein: CNQFRLAARNAMAAGFDGVEIHSAHGYLIDQFLKDGINDRTDEYGGSIENRCRFAIEILEAVSAEIGGGRTAIRLSPIIDHMGATDSNPVALGLYMVEQL

Protein Length: 101

Fln nts: AATGTAATCAGTTTCGCCTGGCAGCCAGAAATGCCATGGCAGCAGGGTTCGACGGAGTAGAAATCCACTCGGCTCATGGATACCTAATAGACCAGTTTCTGAAAGACGGAATCAATGACCGCACAGACGAATATGGAGGCTCCATCGAAAATAGATGCCGATTCGCCATCGAAATCCTGGAAGCCGTGAGTGCAGAAATAGGTGGAGGCAGGACAGCAATAAGGCTTTCCCCCATCATAGACCACATGGGCGCCACAGATTCAAACCCTGTGGCCCTCGGGCTCTACATGGTGGAACAGCTCAA

Fln Alignment:

biogeco3_mira_c7632___NQFRLAARNAMAAGFDGVEIHSAHGYLIDQFLKDGINDRTDEYGGSIENRCRFAIEILEAVSAEIGGGRTAIRLSPIIDHMGATDSNPVALGLYMVEQL
A9P127__________________NDFRLAARNAMKAGFDGVEIHGAHGYLIDQFMKDSINNRTDEYGGTLANRCRFPLEVVEAVANEIGGERVGIRLSPFAQYLESSDSDPEALGLYMAEAL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
91	66			33	0.997452
255			66	33	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain