SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14461

Length: 317 nt

UniGene Fasta

>biog3_v1.0_unigene14461
AATGTCCGGAGGTCATAGAGACTCGCAAGGTCACACAGAAATCCGATGTCTACAGCTTCGGTGTGCTACTCCTAGAACTTCTCACAGGCAAGGCTCCCAACCAGGCCTCTCTCAACGACGAGGGCATCGATCTGCCAAGATGGGTACAATCCGTGGTTCGCGAGGAGTGGACAGCAGAGGTTTTCGACGTGGAATTAATGAGGTATCAAAACATAGAAGAAGAGATGGTCCAGTTGCTGCAGATTGCCATGGCCTGCGTTGCTACAGTGCCTGATCAGAGGCCCAGAATGCAAGACGTGGTGAAGATGATCGACATT

Ace file of the UniGene biog3_v1.0_unigene14461

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene437	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative inactive receptor kinase [Arabidopsis thaliana] sp\|O48788.1\|Y2267_ARATH RecName: Full=Probable inactive receptor kinase At2g26730; Flags: Precursor gb\|AAB95307.1\| putative receptor-like protein kinase [Arabidopsis thaliana] gb\|AAX22262.1\| At2g267	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 105 - 340

Fln protein: CPEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVATVPDQRPRMQDVVKMIDI

Protein Length: 106

Fln nts: AATGTCCGGAGGTCATAGAGACTCGCAAGGTCACACAGAAATCCGATGTCTACAGCTTCGGTGTGCTACTCCTAGAACTTCTCACAGGCAAGGCTCCCAACCAGGCCTCTCTCAACGACGAGGGCATCGATCTGCCAAGATGGGTACAATCCGTGGTTCGCGAGGAGTGGACAGCAGAGGTTTTCGACGTGGAATTAATGAGGTATCAAAACATAGAAGAAGAGATGGTCCAGTTGCTGCAGATTGCCATGGCCTGCGTTGCTACAGTGCCTGATCAGAGGCCCAGAATGCAAGACGTGGTGAAGATGATCGACATT

Fln Alignment:

biogeco3_mira_c7615___PEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVATVPDQRPRMQDVVKMID
B8LN40__________________PEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVAAVPDQRPRMQDVVKMIE

SNPs (tot: 4)

Position	A %	G %	T %	Probability
189	33	66		0.997452
190	33		66	0.997452
191		66	33	0.997452
193	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain