SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14358

Length: 368 nt

UniGene Fasta

>biog3_v1.0_unigene14358
TTGGTTTCATAACCATACGCTTAATTTCACTCGGCCTCACCTTGTGGAGCTGAGAAGCTCGACTGACATTGTGATTGCAAGTTTGACATTTCTGAATTCACCATTTTGGAACATTCATCCAGTGTATAGCAGCAATGTGCGAATCCGGAATGTTACGATTCTTGCACCATCCGACTCACCTAATACGGATGGAATCGATCCAGATTCCTGCAATGATGTCTGCATAGAAGATTGTTACATCAGCACCGGTGATGATTCAATTGCGATAAAGAGTGGCTGGGATGAGTATGGTATTGCTTTTGGCCGTCCTAGTTTCAACATTATTATCCGCCACATAGTCAGTCAAAGCCATACAAGTGCATTACTTG

Ace file of the UniGene biog3_v1.0_unigene14358

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7688	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb\|AAG40344.1\|AF324992_1 AT3g62110 [Arabidopsis thaliana] gb\|AAN31866.1\| unknown protein [Arabidopsis thaliana] gb\|AEE80311.1\| glycoside hydrolase	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	probable polygalacturonase-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose and glucuronate interconversions	00040		80%
Blast2go	Starch and sucrose metabolism	00500		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	80%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	80%
Blast2go	Starch and sucrose metabolism	00500	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	80%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	80%
Blast2go	galacturan 1,4-alpha-galacturonidase activity	GO:0047911	Molecular Function	80%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	80%
Blast2go	vacuole	GO:0005773	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 122 - 472

Fln protein: WFHNHTLNFTRPHLVELRSSTDIVIASLTFLNSPFWNIHPVYSSNVRIRNVTILAPSDSPNTDGIDPDSCNDVCIEDCYISTGDDSIAIKSGWDEYGIAFGRPSFNIIIRHIVSQSHTSALL

Protein Length: 123

Fln nts: TTGGTTTCATAACCATACGCTTAATTTCACTCGGCCTCACCTTGTGGAGCTGAGAAGCTCGACTGACATTGTGATTGCAAGTTTGACATTTCTGAATTCACCATTTTGGAACATTCATCCAGTGTATAGCAGCAATGTGCGAATCCGGAATGTTACGATTCTTGCACCATCCGACTCACCTAATACGGATGGAATCGATCCAGATTCCTGCAATGATGTCTGCATAGAAGATTGTTACATCAGCACCGGTGATGATTCAATTGCGATAAAGAGTGGCTGGGATGAGTATGGTATTGCTTTTGGCCGTCCTAGTTTCAACATTATTATCCGCCACATAGTCAGTCAAAGCCATACAAGTGCATTACTTG

Fln Alignment:

biogeco3_mira_c7290___FHNHTLNFTRPHLVELRSSTDIVIASLTFLNSPFWNIHPVYSSNVRIRNVTILAPSDSPNTDGIDPDSCNDVCIEDCYISTGDDSIAIKSGWDEYGIAFGRPSFNIIIRHIVSQSHTSALL
B8LQW0__________________FHKKILKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain