SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14352

Length: 265 nt

UniGene Fasta

>biog3_v1.0_unigene14352
ATAACAACCATCCAGACTACTANGATGACCTTGTAGATCAAGTTTATCTCAAGAAATTTGATGCAGTTGTGGGCGATACCACAATTTTCGCGAGTCGAAGTAAACATGTCGATTTCACACAACCATTCACTGAATCAGGTATAGTAATGGTGGTTCCTATCAAGGCAGACGAAGCATATAGCGCTTGGGCATTCATGCTGCCTTTTACTCCGCGAATGTGGTGTACAACAGCGGCATTTTTCATATTCACAGGATTTGTAACATT

Ace file of the UniGene biog3_v1.0_unigene14352

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37318	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate receptor n=1 Tax=Vitis vinifera RepID=A5AIS1_VITVI	-	-	43%
FL-Next	sp=Glutamate receptor 2.9; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O81078

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 355 aas, your sequence is shorter than subject: 87 - 940

Fln protein: NNHPDY*DDLVDQVYLKKFDAVVGDTTIFASRSKHVDFTQPFTESGIVMVVPIKADEAYSAWAFMLPFTPRMWCTTAAFFIFTGFVT

Protein Length: 88

Fln nts: ATAACAACCATCCAGACTACTAaGATGACCTTGTAGATCAAGTTTATCTCAAGAAATTTGATGCAGTTGTGGGCGATACCACAATTTTCGCGAGTCGAAGTAAACATGTCGATTTCACACAACCATTCACTGAATCAGGTATAGTAATGGTGGTTCCTATCAAGGCAGACGAAGCATATAGCGCTTGGGCATTCATGCTGCCTTTTACTCCGCGAATGTGGTGTACAACAGCGGCATTTTTCATATTCACAGGATTTGTAACATT

Fln Alignment:

biogeco3_mira_c7272___FDAVVGDTTIFASRSKHVDFTQPFTESGIVMVVPIKADEAYSAWAFMLPFTPRMWCTTAAFFIFTGFV
O81078__________________WDAVVGDITITANRSLYADFTLPFTESGVSMMVPVRDNENKDTWVFLEPWSLELWVTTGCFFVFIGFV

SNPs (tot: 3)

Position	A %	G %	Probability
140	33	66	0.997452
141	33	66	0.997452
143	66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain