SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14323

Length: 201 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14323
TTCAATTTTGCTAAAGACAGAAGTGATTTAGGGAAACATCTGTTTCTCGCATGGGCAGGATGGGTTTGTGTCTGGACATCTCTCCTGCTATGTCTTCTTTCAATTTTGGGGCTTGTTCAATCATCAGTAGATTTACCAGAATAGCTGGAGAACTTTTGGGATGCTGATCGCTGTCCTGTTCATGCAAGAAGCCATTAAATT

Ace file of the UniGene biog3_v1.0_unigene14323 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1084	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Boron transporter n=1 Tax=Citrus macrophylla RepID=A5JUZ5_9ROSI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	anion exchanger family protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	borate transport	GO:0046713	Biological Process	87%
Blast2go	response to boron-containing substance	GO:0010036	Biological Process	87%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	87%
Blast2go	borate transmembrane transporter activity	GO:0046715	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: Separated hits, possible frame ERROR between 81 and 105, and possible frame ERROR between 152 and 155, Distance to subject end: 494 aas, your sequence is shorter than subject: 67 - 671

Fln protein: FNFAKDRSDLGKHLFLAWAGWVCVWTxxxxxxxxxFGACSIISRFTRIAGxxFGMLIAVLFMQEAIK

Protein Length: 68

Fln nts: TTCAATTTTGCTAAAGACAGAAGTGATTTAGGGAAACATCTGTTTCTCGCATGGGCAGGATGGGTTTGTGTCTGGACATCxxxxxxxxxxxxxxxxxxxxxxxxTTTTGGGGCTTGTTCAATCATCAGTAGATTTACCAGAATAGCTGGAGxxxCTTTTGGGATGCTGATCGCTGTCCTGTTCATGCAAGAAGCCATTAAATT

Fln Alignment:

biogeco3_mira_c7185___FNFAKDRSDLGKHLFLAWAGWVCVWTSxxxxxxxxFGACSIISRFTRIAGExFGMLIAVLFMQEAIK
B8LRN9__________________FNFAKNRSDLGQRLFLAWAGWACVWTSxxxxxxxxFGACSIISRFTRVAGExFGMLIAVLFMQEAIK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
39	33	66			0.997452
42		33	33		0.99774
43		66		33	0.997454
45	33	66			0.997456
81	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain