SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14319

Length: 546 nt

UniGene Fasta

>biog3_v1.0_unigene14319
AATGTGGTTTGCTCTTGTGCTTGGAAATCAACACTGTAACATGTAAAGGGAATGTAATATCCGGAACCACCGATGGATCTGAAAAGTGGGGTTATATTGAAGTCAGACCACAAGCCCATATGTTTTGGTGGCTCTACTACAGACCAGTACAAACAGCTGATAATTGGCCTCTTATTTTATGGTTGCAAGGAGGGCCGGGAGCTTCGGGGGTTGGAATTGGAAATTTTCAAGAAGTAGGCCCCTTGGACACAGACTTGAAGCCTCGAAACACAACATGGTTGCAAAAGGCAGACTTGTTATTTGTGGATAGCCCTGTTGGTACAGGGTTTAGCTATGTAGAAAACAGTTCATTGGCAGCAACAACAGATGCGGAAGTAACCACTGACTTGTTAAGCTTTTAAAGATTTATTTGGTACAAACAGTACTCTGCAAAAGAGGCCTCTATTTATTGTAGGCGAATCATATGGAGGAAAACATGCCAGTATGATAGGCCTTGCTTTAAGTAAAGCAATTGCTGCAGGAGAGATGAAAGCTAATCTTGACATT

Ace file of the UniGene biog3_v1.0_unigene14319

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7007	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase-like 51 [Arabidopsis thaliana] sp\|Q67Y83.2\|SCP51_ARATH RecName: Full=Serine carboxypeptidase-like 51; Flags: Precursor gb\|AAL06502.1\|AF412049_1 At2g27920/T1E2.16 [Arabidopsis thaliana] gb\|AAD21510.2\| putative carboxypeptidase [Arab	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	serine carboxypeptidase-like 51-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	72%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	72%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P077

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 128 aas, your sequence is shorter than subject: 133 - 343

Fln protein: CGLLLCLEINTVTCKGNVISGTTDGSEKWGYIEVRPQAHMFWWLYYRPVQTADNWPLILWLQGGPGASGVGIGNFQEVGPLDTDLKPRNTTWLQKADLLFVDSPVGTGFSYVENSSLAATTDAEVTTDLLSF*

Protein Length: 134

Fln nts: AATGTGGTTTGCTCTTGTGCTTGGAAATCAACACTGTAACATGTAAAGGGAATGTAATATCCGGAACCACCGATGGATCTGAAAAGTGGGGTTATATTGAAGTCAGACCACAAGCCCATATGTTTTGGTGGCTCTACTACAGACCAGTACAAACAGCTGATAATTGGCCTCTTATTTTATGGTTGCAAGGAGGGCCGGGAGCTTCGGGGGTTGGAATTGGAAATTTTCAAGAAGTAGGCCCCTTGGACACAGACTTGAAGCCTCGAAACACAACATGGTTGCAAAAGGCAGACTTGTTATTTGTGGATAGCCCTGTTGGTACAGGGTTTAGCTATGTAGAAAACAGTTCATTGGCAGCAACAACAGATGCGGAAGTAACCACTGACTTGTTAAGCTTTTAAAGATTTATTTGGTACAAACAGTACTCTGCAAAAGAGGCCTCTATTTATTGTAGGCGAATCATATGGAGGAAAACATGCCAGTATGATAGGCCTTGCTTTAAGTAAAGCAATTGCTGCAGGAGAGATGAAAGCTAATCTTGACATT

Fln Alignment:

biogeco3_mira_c7168___GYIEVRPQ--AHMFWWLYYRPVQTADNWPLILWLQGGPGASGVGIGNFQEVGPL-----DTDLKPRNTTWLQKADLLFVDSPVGTGFSYVENSS
A9P077__________________GYVTVHEEHGRALFYW-FFEAALLKEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDGNGTDLIFNKYSWNQEANLLFVESPVGVGFSYSNTSS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
311	25		75		0.996473
312		75		25	0.996473
313		75	25		0.996473
314		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain