SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14318

Length: 510 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14318
GTGACGAGCTCGCTGCTCTGGAAACTCTTGACAATGGAAAACCGCTGGATATGGCTCGGATGAGTGATATACCATACTGTGTTGACGTTCTCCGATACTATGCTGGGTCAGCTGATAAAATTCATGGACTAACAATGAAGATGAATGGGCAGTATCAGGGTTATACTTTGCATGAACCCATTGGAGTCGTTGGTCAGATAGTACCGTGGAACTATCCAATGTTGATGTTCTTCAGTAAGGTCAGCCCTGCCTTGGCCTGTGGATGTACAGTAGTTATCAAATCTGCAGAGCAGACTCCCTTAACTGCACTTTATTGTGCACAACTGGCCAAGGAGGCTGGGATTCCCCCTGGTGTCCTAAATGTGCTCTCTGGTTTTGGCGAAACTGCGGGCGCTGCCATAAGCAGCCACATGGATATTGATAAGATATCATTTACAGGGTCCACTCAAGTTGGGCGACTCATCATGGAAGCTGCTGCAAAAAGCAACTTGAAGCCGGTGACATTACATT

Ace file of the UniGene biog3_v1.0_unigene14318 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7822	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cytosolic aldehyde dehydrogenase n=2 Tax=Oryza sativa RepID=Q69XE0_ORYSJ	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Retinal dehydrogenase.	EC:1.2.1.36	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Retinol metabolism	00830		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	0.0	81%
Blast2go	retinal dehydrogenase activity	GO:0001758	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 169 - 500

Fln protein: DELAALETLDNGKPLDMARMSDIPYCVDVLRYYAGSADKIHGLTMKMNGQYQGYTLHEPIGVVGQIVPWNYPMLMFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLAKEAGIPPGVLNVLSGFGETAGAAISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLH

Protein Length: 170

Fln nts: GTGACGAGCTCGCTGCTCTGGAAACTCTTGACAATGGAAAACCGCTGGATATGGCTCGGATGAGTGATATACCATACTGTGTTGACGTTCTCCGATACTATGCTGGGTCAGCTGATAAAATTCATGGACTAACAATGAAGATGAATGGGCAGTATCAGGGTTATACTTTGCATGAACCCATTGGAGTCGTTGGTCAGATAGTACCGTGGAACTATCCAATGTTGATGTTCTTCAGTAAGGTCAGCCCTGCCTTGGCCTGTGGATGTACAGTAGTTATCAAATCTGCAGAGCAGACTCCCTTAACTGCACTTTATTGTGCACAACTGGCCAAGGAGGCTGGGATTCCCCCTGGTGTCCTAAATGTGCTCTCTGGTTTTGGCGAAACTGCGGGCGCTGCCATAAGCAGCCACATGGATATTGATAAGATATCATTTACAGGGTCCACTCAAGTTGGGCGACTCATCATGGAAGCTGCTGCAAAAAGCAACTTGAAGCCGGTGACATTACATT

Fln Alignment:

biogeco3_mira_c7166___DELAALETLDNGKPLDMARMSDIPYCVDVLRYYAGSADKIHGLTMKMNGQYQGYTLHEPIGVVGQIVPWNYPMLMFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLAKEAGIPPGVLNVLSGFGETAGAAISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTL
B8LLF5__________________DELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
276	33	66			0.997454
279	66			33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain