SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14310

Length: 277 nt

UniGene Fasta

>biog3_v1.0_unigene14310
GCTTTATGAACGGGTGTTGAAATATCCTGAGAGAGTGAGAAATTTGTACTTCACATTCCTCTTTGTGCTTCGAGCAGTGACAAAGGCAGCTGACTACCTTTCCCAAGCAGAATACAGCACAGGAAATCCATTAGAGGATAAACATACACAGTCATTAATCATTCAGCTTGTAAATAACAGGCAATTACAAGCAGCTTGTCCAATTCCTTTTGATGAAGCCAAATTGTGGAGGGGTCAGAATGTGCATGACTTGAAAAGGCAAATTCAGTTGCAGTTC

Ace file of the UniGene biog3_v1.0_unigene14310

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2303	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative endoplasmic reticulum oxidoreductin [Oryza sativa Japonica Group] gb\|ABF98719.1\| Endoplasmic oxidoreductin 1 precursor, putative, expressed [Oryza sativa Japonica Group]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	endoplasmic oxidoreductin-1	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein thiol-disulfide exchange	GO:0006467	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	82%
Blast2go	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	82%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Endoplasmic reticulum oxidoreductin 1	IPR007266	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQH5

Fln msg: Distance to subject end: 92 aas, your sequence is shorter than subject: 92 - 339

Fln protein: LYERVLKYPERVRNLYFTFLFVLRAVTKAADYLSQAEYSTGNPLEDKHTQSLIIQLVNNRQLQAACPIPFDEAKLWRGQNVHDLKRQIQLQF

Protein Length: 93

Fln nts: GCTTTATGAACGGGTGTTGAAATATCCTGAGAGAGTGAGAAATTTGTACTTCACATTCCTCTTTGTGCTTCGAGCAGTGACAAAGGCAGCTGACTACCTTTCCCAAGCAGAATACAGCACAGGAAATCCATTAGAGGATAAACATACACAGTCATTAATCATTCAGCTTGTAAATAACAGGCAATTACAAGCAGCTTGTCCAATTCCTTTTGATGAAGCCAAATTGTGGAGGGGTCAGAATGTGCATGACTTGAAAAGGCAAATTCAGTTGCAGTTC

Fln Alignment:

biogeco3_mira_c7135___LYERVLKYPERVRNLYFTFLFVLRAVTKAADYLSQAEYSTGNPLEDKHTQSLIIQLVNNRQLQAACPIPFDEAKLWRGQNVHDLKRQIQLQF
B8LQH5__________________LYERVLKYPERVRNLYFTFLFVLRAVTKAADYLSQAEYSTGNPLEDQHTQSLMIQLVNNRQLHAACPIPFDEAKLWKGQNVHDLKRQIQLQF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
62	33			66	0.997452
63	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain