SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14303

Length: 270 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14303
ATTTGAATGTGAAAAGCTGGGGTTCTCTTATCAACACTTTCTATGATCTAGAAGCTGTTTATATAGATCATCTGCACAGGGTTGTTTCCGGTAGGCATGTTTGGTCTGTGGGTCCTCTGCTCCCTCCTGCAGTTTTCGAGGCGAGGCAGATAAGAAACAACATTGAGAGAGGGAAACCCCTTTCAATGGATGATTCGGTATGTGTTCAATGGCTTGACTCTCGGAAGGAGAAGTCTGTTATTTATATTTGCTTTGGCAGCCAGGCCTGCC

Ace file of the UniGene biog3_v1.0_unigene14303 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14765	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RLH6_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	udp-glucoronosyl udp-glucosyl transferase family protein	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	quercetin 4'-O-glucosyltransferase activity	GO:0080046	Molecular Function	67%
Blast2go	quercetin 7-O-glucosyltransferase activity	GO:0080044	Molecular Function	67%
Blast2go	quercetin 3-O-glucosyltransferase activity	GO:0080043	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Transcription factor, fork head	IPR001766	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR013084	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018351	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS21

Fln msg: Distance to subject end: 184 aas, your sequence is shorter than subject: 89 - 491

Fln protein: LNVKSWGSLINTFYDLEAVYIDHLHRVVSGRHVWSVGPLLPPAVFEARQIRNNIERGKPLSMDDSVCVQWLDSRKEKSVIYICFGSQAC

Protein Length: 90

Fln nts: ATTTGAATGTGAAAAGCTGGGGTTCTCTTATCAACACTTTCTATGATCTAGAAGCTGTTTATATAGATCATCTGCACAGGGTTGTTTCCGGTAGGCATGTTTGGTCTGTGGGTCCTCTGCTCCCTCCTGCAGTTTTCGAGGCGAGGCAGATAAGAAACAACATTGAGAGAGGGAAACCCCTTTCAATGGATGATTCGGTATGTGTTCAATGGCTTGACTCTCGGAAGGAGAAGTCTGTTATTTATATTTGCTTTGGCAGCCAGGCCTGCC

Fln Alignment:

biogeco3_mira_c7111___LNVKSWGSLINTFYDLEAVYIDHLHRVVSGRHVWSVGPLLPPAVFEARQIRNNIERGKPLSMDDSVCVQWLDSRKEKSVIYICFGSQAC
B8LS21__________________LNVKSWGTIINTFYDLEALYIDHVQGV-SGRPVWSVGPLLPPALFEAKQRRTMIERGKPTSIDDSVCLQWLESRKEKSVIYICFGSQAC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
208		25		75	0.996473
211	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain