SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14298

Length: 201 nt

UniGene Fasta

>biog3_v1.0_unigene14298
ACGTAACATCTACGGTGGAATAGAGGCAGTAGTCTCTGCAGAACGCAGCAGTCTGGGCAGTCTCAGAACATCAAACGTTGTGGGTTAAGCTAAAATAGAGTTTTGAATCAGTAGTGGTTTACAGTCAAAACAATGGAGGATGAAGCAGTTAACATTGCCGTGCACCGGTCATCTACTCGTATTCGCAAGGTTGCTCCTAGG

Ace file of the UniGene biog3_v1.0_unigene14298

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25977	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein [Nicotiana benthamiana]	-	-	1.96182e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	zinc finger hit domain-containing protein 1	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	79%
Blast2go	regulation of developmental growth	GO:0048638	Biological Process	79%
Blast2go	regulation of flower development	GO:0009909	Biological Process	79%
Blast2go	identical protein binding	GO:0042802	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, HIT-type	IPR007529	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG3

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 23 - 174

Fln protein: MEDEAVNIAVHRSSTRIRKVAPR

Protein Length: 24

Fln nts: ACGTAACATCTACGGTGGAATAGAGGCAGTAGTCTCTGCAGAACGCAGCAGTCTGGGCAGTCTCAGAACATCAAACGTTGTGGGTTAAGCTAAAATAGAGTTTTGAATCAGTAGTGGTTTACAGTCAAAACA_-_ATGGAGGATGAAGCAGTTAACATTGCCGTGCACCGGTCATCTACTCGTATTCGCAAGGTTGCTCCTAGG

Fln Alignment:

biogeco3_mira_c7082___MEDEAVNIAVHRSSTRIRKVAPR
D5AEG3__________________MEDEAVNIAVHRSSTRIRKVAPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain