SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14189

Length: 418 nt

UniGene Fasta

>biog3_v1.0_unigene14189
CAGGTTGTAGTTGGATGGAGGTTAACAACACCTTGCATACATTTCTAACAGGGAGTACCACACATCCACAAACCAAGGAAATACATGCAACATTAGATGTATTAAGTCTGCAGATGAAAGACTTAGGGTATAGACCTGATACAAACTTTGTTTGCATGATGTAGAAATGGAGCAAAGGAACATATTCTCTTTTATCACAGTGAAAGTTAGCCATTGCTTTTGGCCTTATCAATATGCCTGCTGGAACACCTATTCACATCATGAAAACCTTCGTGTATGTGGTGATTGCCATACTGCTACGAAGTTCATCTCTAAGATTGTTAAACGACAAATTATTGTGAGAGATTCTAATCGGTTTCACCATTTCAATGATGGATTCTGTTCTTGTGGGGATTATTGGTGATGTCAAAGGAACATT

Ace file of the UniGene biog3_v1.0_unigene14189

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39353	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	pentatricopeptide repeat-containing protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A804

Fln msg: Overlapping hits, possible frame ERROR between 269 and 263, your sequence is shorter than subject: 134 - 246

Fln protein: GCSWMEVNNTLHTFLTGSTTHPQTKEIHATLDVLSLQMKDLGYRPDTNFVCMM*KWSKGTYSLLSQ*KLAIAFGLINMPAGTPIHIxxxxRVCGDCHTATKFISKIVKRQIIVRDSNRFHHFNDGFCSCGDYW*

Protein Length: 135

Fln nts: CAGGTTGTAGTTGGATGGAGGTTAACAACACCTTGCATACATTTCTAACAGGGAGTACCACACATCCACAAACCAAGGAAATACATGCAACATTAGATGTATTAAGTCTGCAGATGAAAGACTTAGGGTATAGACCTGATACAAACTTTGTTTGCATGATGTAGAAATGGAGCAAAGGAACATATTCTCTTTTATCACAGTGAAAGTTAGCCATTGCTTTTGGCCTTATCAATATGCCTGCTGGAACACCTATTCACATCxxxxxxxxxxxxCGTGTATGTGGTGATTGCCATACTGCTACGAAGTTCATCTCTAAGATTGTTAAACGACAAATTATTGTGAGAGATTCTAATCGGTTTCACCATTTCAATGATGGATTCTGTTCTTGTGGGGATTATTGGTGATGTCAAAGGAACATT

Fln Alignment:

biogeco3_mira_c6733___CSWMEVNNTLHTFLTGSTTHPQTKEIHATLDVLSLQMKDLGYRPDTNFVCMM*KWSKGTYSLLS-Q*KLAIAFGLINMPAGTPIHIMxxLRVCGDCHTATKFISKIVKRQIIVRDSNRFHHFNDGFCSCGDYW
D5A804__________________CSFIEVNNSVHTFHMEDRSHPQSQGIYLMLESLVGQMKEAGYVPNLDSVFNNVEDDVKERMLMGHSEKLAIAFGLINTNSGTPLRITxxLRVCDDCHNAAKIISKVVEREITLRGAHRFHHFKGGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain