SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14158

Length: 235 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14158
AATGTCAATATGAATGATCCGGGGGAAGCCAGTAGAGATATTACAGACTTTGGAAGTTATATTAGTGTATTTTGGAGCTATGTGGATATCATGAATCTCAAATTGCAAACATAGCTGCAGAGTGTTTAATTCTTTTTACTAATGCAGCATCAAAAGAAGCAGCCATGAGTTTGTTCTCAAATCTTTCATTGCTTGGAAGGGTTTTAGAGTTGCTTTCTCTCCGGCAAAACACATT

Ace file of the UniGene biog3_v1.0_unigene14158 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2577	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RSY9_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	serine threonine-protein kinase ulk4-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	phragmoplast assembly	GO:0000914	Biological Process	67%
Blast2go	endosperm cellularization	GO:0010342	Biological Process	67%
Blast2go	microtubule binding	GO:0008017	Molecular Function	67%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC92

Fln msg: Overlapping hits, possible frame ERROR between 72 and 72, Distance to subject end: 73 aas, your sequence is shorter than subject: 78 - 273

Fln protein: NVNMNDPGEASRDITDFGSYISVxxELCGYHESQIANIAAECLILFTNAASKEAAMSLFSNLSLLGRVLELLSLRQNT

Protein Length: 79

Fln nts: AATGTCAATATGAATGATCCGGGGGAAGCCAGTAGAGATATTACAGACTTTGGAAGTTATATTAGTGTAxxxxxxGAGCTATGTGGATATCATGAATCTCAAATTGCAAACATAGCTGCAGAGTGTTTAATTCTTTTTACTAATGCAGCATCAAAAGAAGCAGCCATGAGTTTGTTCTCAAATCTTTCATTGCTTGGAAGGGTTTTAGAGTTGCTTTCTCTCCGGCAAAACACATT

Fln Alignment:

biogeco3_mira_c6633___NMNDPGEASRDITDFGSYISVFLELCGYHESQIANIAAECLILFTNAASKEAAMSLFXXXXXXXXXXXXXXLRQN
D5AC92__________________NMNDQEDASTDITDFGGYISVFLELCGYHECQIANLAAECLILFTNTASKEAAMNLFSNLSLLGRVLELLSLRQN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
104			75	25	0.996476
139		50	50		1.0
141		50		50	1.0
167	33		33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain