SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14132

Length: 408 nt

UniGene Fasta

>biog3_v1.0_unigene14132
GATACCAGACATTCAAATTGTGAAGCTTGCTCCTTCAATTTCCTGATTGCGGTATCTCCATGAAATTTCTGTGATAAAGCCATCAATGGAGGTGGAGCTGAATTGACTCCTCGTAATATGAATCCGTTCGACTTCTACGTTGCTTCCGTATGCGGGGGAATTTTGAGCTCTGGGCTGACCCATACAGGTGTCACGCCCCTCGATATTGTTAAATGTAATATGCAGGCAAATCCATCGAAGTACAGGAGCATTAGGACTGGATTTGTTAAGTTAGTGAATAAACATGGCGTGGGAGCCTTATTCACAGGATGGCTGCCGACCCTCTTGGGGTACAGCGTTCAAGGTGCCCTCAAGTTTGGATTCTATGAATTCTTCAAGATATTATATTCGGATATGCTCGGACCCAAG

Ace file of the UniGene biog3_v1.0_unigene14132

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3966	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier n=4 Tax=Malpighiales RepID=B7UB90_POPTR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	mitochondrial phosphate carrier protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%
Blast2go	cell wall	GO:0005618	Cellular Component	78%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQZ5

Fln msg: Distance to subject end: 207 aas, your sequence is shorter than subject: 97 - 304

Fln protein: MNPFDFYVASVCGGILSSGLTHTGVTPLDIVKCNMQANPSKYRSIRTGFVKLVNKHGVGALFTGWLPTLLGYSVQGALKFGFYEFFKILYSDMLGPK

Protein Length: 98

Fln nts: GATACCAGACATTCAAATTGTGAAGCTTGCTCCTTCAATTTCCTGATTGCGGTATCTCCATGAAATTTCTGTGATAAAGCCATCAATGGAGGTGGAGCTGAATTGACTCCTCGTAAT_-_ATGAATCCGTTCGACTTCTACGTTGCTTCCGTATGCGGGGGAATTTTGAGCTCTGGGCTGACCCATACAGGTGTCACGCCCCTCGATATTGTTAAATGTAATATGCAGGCAAATCCATCGAAGTACAGGAGCATTAGGACTGGATTTGTTAAGTTAGTGAATAAACATGGCGTGGGAGCCTTATTCACAGGATGGCTGCCGACCCTCTTGGGGTACAGCGTTCAAGGTGCCCTCAAGTTTGGATTCTATGAATTCTTCAAGATATTATATTCGGATATGCTCGGACCCAAG

Fln Alignment:

biogeco3_mira_c6521___MNPFDFYVASVCGGILSSGLTHTGVTPLDIVKCNMQANPSKYRSIRTGFVKLVNKHGVGALFTGWLPTLLGYSVQGALKFGFYEFFKILYSDMLG
A9NQZ5__________________MTPIDFYAACMLGGVFSCGLTHTGLTPLDLLKCNMQANPSKYRSIRGGFGKLVNKHGVGALFTGWLPTLLGYSAQGAFKFGFYEFFKLSYSGILG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
111	33	66			0.997467
112	33	66			0.997467
114		66	33		0.997464
115			66	33	0.997459
138	25			75	0.996481
140		75		25	0.996481
156	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain