SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14093

Length: 217 nt

UniGene Fasta

>biog3_v1.0_unigene14093
AATGTAGCAACTCTCGCAATTCATTTTTGTACTGGACAATTCGTGATTATGCTCATGCATATCGATGTGGTTGGACCACACCTTCTGATGTTGCTGAATACATCATCTCAGCTGTAGAAAAATCACTCAACAATAAGCCTGCTATGATGCTTTTCATTTATTTTAATGCCGATGAAGTCAGGAAGCAAGCTGCAGCTTCTACAACACGCTTTCAAGA

Ace file of the UniGene biog3_v1.0_unigene14093

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamyl-tRNA(Gln) amidotransferase subunit A, putative n=1 Tax=Ricinus communis RepID=B9RX50_RICCO	-	-	63%
FL-Next	tr=N-acylethanolamine amidohydrolase; Oryza sativa subsp. japonica (Rice).	-	-	67%
Blast2go	n-acylethanolamine amidohydrolase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Carbon--nitrogen ligases with glutamine as amido-N-donor.	EC:6.3.5.-	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Tetracycline biosynthesis	00253		76%
Blast2go	Biosynthesis of secondary metabolites	01110		76%
Blast2go		EC:3.5.1.6-	-	76%
Blast2go	Amidase.	EC:3.5.1.4	-	76%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	76%
Blast2go	Phenylalanine metabolism	00360	76%
Blast2go	Tryptophan metabolism	00380	76%
Blast2go	Cyanoamino acid metabolism	00460	76%
Blast2go	Aminobenzoate degradation	00627	76%
Blast2go	Styrene degradation	00643	76%
Blast2go	Biosynthesis of plant hormones	01070	76%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	76%
Blast2go	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	76%
Blast2go	N-(long-chain-acyl)ethanolamine deacylase activity	GO:0047412	Molecular Function	76%
Blast2go	transferase activity	GO:0016740	Molecular Function	76%
Blast2go	amidase activity	GO:0004040	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amidase	IPR000120	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q7XTB3

Fln msg: Distance to subject end: 417 aas, your sequence is shorter than subject: 71 - 601

Fln protein: CSNSRNSFLYWTIRDYAHAYRCGWTTPSDVAEYIISAVEKSLNNKPAMMLFIYFNADEVRKQAAASTTRFQ

Protein Length: 72

Fln nts: AATGTAGCAACTCTCGCAATTCATTTTTGTACTGGACAATTCGTGATTATGCTCATGCATATCGATGTGGTTGGACCACACCTTCTGATGTTGCTGAATACATCATCTCAGCTGTAGAAAAATCACTCAACAATAAGCCTGCTATGATGCTTTTCATTTATTTTAATGCCGATGAAGTCAGGAAGCAAGCTGCAGCTTCTACAACACGCTTTCAAGA

Fln Alignment:

biogeco3_mira_c6379___FLYWTIRDYAHAYRCGWTTPSDVAEYIISAVEKSLNNKPAMMLFIYFNADEVRKQAAASTTRFQ
Q7XTB3__________________FLYWKIRDFAHAYRSGITTPSVVAEHIIAGVEEWSNKKPPMPMLVYFNADDLRKQAEASTKRFQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
87	20		80		0.995493
104		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain