SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14081

Length: 341 nt

UniGene Fasta

>biog3_v1.0_unigene14081
CACAATGACTTTAAATTTGGCATGCTGAAATCCAAGTAAGTTTAATCTGAACGACTCATATTTTTTGATCACATAGATCTTGCATGCTTTTCCAGGACTGAGTGGACATTAACATTTCAATCAAGACTTGGCAGGGCAGCTCTGGCTTTGCTAGGAGGATCACATTTCAAAATGTGCAAATGCAGAATGTCAAACATCCCATAATTATTGATCAGTACTACTGTGATTCTAAGAAACCATGCTTAAATAAGACATCTGCTGTGAAAGTGAGTGACGTTGCATTCTTGAACATCAAAGGCACATCGGCAAGCAAAGAAGTAATGAGATTTGCTTGCAACATT

Ace file of the UniGene biog3_v1.0_unigene14081

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene309	2/3
SustainPine v2.0	sp_v2.0_unigene10104	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase n=1 Tax=Citrus sinensis RepID=A2IB56_CITSI	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	polygalacturonase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	71%
Blast2go	Starch and sucrose metabolism	00500	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	71%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	71%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 78 aas, your sequence is shorter than subject: 113 - 493

Fln protein: Q*L*IWHAEIQVSLI*TTHIF*SHRSCMLFQD*VDINISIKTWQGSSGFARRITFQNVQMQNVKHPIIIDQYYCDSKKPCLNKTSAVKVSDVAFLNIKGTSASKEVMRFACNI

Protein Length: 114

Fln nts: CACAATGACTTTAAATTTGGCATGCTGAAATCCAAGTAAGTTTAATCTGAACGACTCATATTTTTTGATCACATAGATCTTGCATGCTTTTCCAGGACTGAGTGGACATTAACATTTCAATCAAGACTTGGCAGGGCAGCTCTGGCTTTGCTAGGAGGATCACATTTCAAAATGTGCAAATGCAGAATGTCAAACATCCCATAATTATTGATCAGTACTACTGTGATTCTAAGAAACCATGCTTAAATAAGACATCTGCTGTGAAAGTGAGTGACGTTGCATTCTTGAACATCAAAGGCACATCGGCAAGCAAAGAAGTAATGAGATTTGCTTGCAACATT

Fln Alignment:

biogeco3_mira_c6334___ISIKTWQGSSGFARRITFQNVQMQNVKHPIIIDQYYCDSKKPCLNKTSAVKVSDVAFLNIKGTSASKEVMRFACN
B8LQX9__________________LRIKTWQGSSGSARRILFQNVHMENVKHPIIIDQYYCDSKKPCSNKTSAVKVSEVAYLNIKGTSASKEVMRFACS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
120	66	33			0.997458
122		66	33		0.997456
124	66			33	0.997471
125			66	33	0.997476
126	66			33	0.997476
127	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain