SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14075

Length: 376 nt

UniGene Fasta

>biog3_v1.0_unigene14075
TCAAAGATGGCAATGGCAGTCACCCAGCACTCATACGCTTCCCGGGCACTGTTACAGCGCGATTGTGATATCAATGGCAATGTCAACCTACAGGAGTCTCAGATTGCTGGCGAGCAAGCGCTCTGCTGGAAAACAAATGACATTTGAGGGACGAGATTATGTAGTAGAGGAGCTCACTGAAGATAGTTTCCGTGGGATTGACATTGCTCTGTTCAGTGCTGGTGGCTCAATAAGCAAGAAGTTACGGACCCATAGCTGCACAACAGGGGACAGTTGTAGTAGACAACAGCTCTGCGTTCCGTATGGACGATGGTGTACCCCTTGTGATTCCCGAGGTGAATCCAGAGGCAATGTCTCACGTAAAACTTAGTTACAA

Ace file of the UniGene biog3_v1.0_unigene14075

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13412	3/5
SustainPine v2.0	sp_v2.0_unigene78334	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	semialdehyde dehydrogenase-like protein [Arabidopsis thaliana] gb\|AAL50097.1\| At1g14810/F10B6_6 [Arabidopsis thaliana] gb\|AAM26654.1\| At1g14810/F10B6_6 [Arabidopsis thaliana] gb\|AAM61063.1\| aspartate-semialdehyde dehydrogenase, putative [Arabidopsis thali	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate-semialdehyde dehydrogenase.	EC:1.2.1.11	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	89%
Blast2go	Cysteine and methionine metabolism	00270	89%
Blast2go	Lysine biosynthesis	00300	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	threonine biosynthetic process	GO:0009088	Biological Process	89%
Blast2go	methionine biosynthetic process	GO:0009086	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	NAD binding	GO:0051287	Molecular Function	89%
Blast2go	aspartate-semialdehyde dehydrogenase activity	GO:0004073	Molecular Function	89%
Blast2go	NADP binding	GO:0050661	Molecular Function	89%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate-semialdehyde dehydrogenase	IPR012080	-	-
Sma3	Aspartate-semialdehyde dehydrogenase, beta-type	IPR005986	-	-
Sma3	Semialdehyde dehydrogenase, NAD-binding	IPR000534	-	-
Sma3	Semialdehyde dehydrogenase, dimerisation domain	IPR012280	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9F9

Fln msg: Overlapping hits, possible frame ERROR between 241 and 234, Distance to subject end: 215 aas, your sequence is shorter than subject: 125 - 397

Fln protein: QRWQWQSPSTHTLPGHCYSAIVISMAMSTYRSLRLLASKRSAGKQMTFEGRDYVVEELTEDSFRGIDIALFSAGGSIxxxxYGPIAAQQGTVVVDNSSAFRMDDGVPLVIPEVNPEAMSHVKLSY

Protein Length: 126

Fln nts: TCAAAGATGGCAATGGCAGTCACCCAGCACTCATACGCTTCCCGGGCACTGTTACAGCGCGATTGTGATATCAATGGCAATGTCAACCTACAGGAGTCTCAGATTGCTGGCGAGCAAGCGCTCTGCTGGAAAACAAATGACATTTGAGGGACGAGATTATGTAGTAGAGGAGCTCACTGAAGATAGTTTCCGTGGGATTGACATTGCTCTGTTCAGTGCTGGTGGCTCAATAxxxxxxxxxxxxTACGGACCCATAGCTGCACAACAGGGGACAGTTGTAGTAGACAACAGCTCTGCGTTCCGTATGGACGATGGTGTACCCCTTGTGATTCCCGAGGTGAATCCAGAGGCAATGTCTCACGTAAAACTTAGTTACAA

Fln Alignment:

biogeco3_mira_c6309___YRSLRLLASKRSAGKQMTFEGRDYVVEELTEDSFRGIDIALFSAGGSIxxxYGPIAAQQGTVVVDNSSAFRMDDGVPLVIPEVNPEAMSHVKLS
D5A9F9__________________YRSLTLLASKRSAGKQMTFEGRDYVVEELTEDSFHGIDIALFSAGGSIxxxFGPIAAQQGTVVVDNSSAFRMDDGVPLVIPEVNPEAMSHIKLS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
135	80		20		0.995493
136	80			20	0.995493
198		20		80	0.995493
243	20		80		0.995493
251	40		60		1.0
252			60	40	1.0
253	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain