SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14072

Length: 312 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14072
GATGCTGGGGAAGTGTTGAAGACCATGCGAAGAGCGTTGAGGTAAACCAGCCCCTCAGGTATCAGGTCTTCCTTCAAGATAGGCCAAAATGCGGGATTTGTCATCATGTTTTGGGGAACATGGAGTCCAGGTCGCAGATTACTCCTCCTCTGCTTCATCCTCCCGAACCCACAACAATACCCACAACACCAATAGCATGATGATGCAGAACATGGTCACCTGCCTGTATCTGACTACATTATCAGGCCAAACACGCCTGATAACGGTCACATGGTGCAAAAACCTAATGGGTCAAGGCCTGAGCGTCACATT

Ace file of the UniGene biog3_v1.0_unigene14072 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28668	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF868 domain containing protein	-	-	1.0e-17	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	2.48224e-27	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 74 - 270

Fln protein: MRDLSSCFGEHGVQVADYSSSASSSRTHNNTHNTNSMMMQNMVTCLYLTTLSGQTRLITVTWCKNLMGQGLSVT

Protein Length: 75

Fln nts: GATGCTGGGGAAGTGTTGAAGACCATGCGAAGAGCGTTGAGGTAAACCAGCCCCTCAGGTATCAGGTCTTCCTTCAAGATAGGCCAAA_-_ATGCGGGATTTGTCATCATGTTTTGGGGAACATGGAGTCCAGGTCGCAGATTACTCCTCCTCTGCTTCATCCTCCCGAACCCACAACAATACCCACAACACCAATAGCATGATGATGCAGAACATGGTCACCTGCCTGTATCTGACTACATTATCAGGCCAAACACGCCTGATAACGGTCACATGGTGCAAAAACCTAATGGGTCAAGGCCTGAGCGTCACATT

Fln Alignment:

biogeco3_mira_c6294___VTCLYLTTLSGQTRLITVTWCKNLMGQGLSV
B8LNS3__________________VTCLYLTTLSGQTRLITVTWCKNLMGQGLSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain