SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14068

Length: 495 nt

UniGene Fasta

>biog3_v1.0_unigene14068
GATGAATGCAAGGAGAGAACTGCTTGCCAGTGCAGTGACTGTACTTGCAAGAATAAATGGGGTGGATATGATTGCAAATGCAAGGGGGATCTTTTGTACATTGCAGCACATGATACTTGCATTGCTAGGATTTCTTCAAGATTTGGCTGGGTTTTGGCAATCCTTGTTATAGCCTGCTTAGCGGGTTTTGCAACTATTGGTTATGTGTTCTACAAGTACAGACTTCGGTCGTACATGGACTCTGAAATCATGGCTATCATGTCTCAATATATGCCATTGGACCAAAATGAGGCTCATCAACCTCTACAACAAAGTTCAGCATGAGGTTGTGCCGTTTTGTGATTTATCCAAGAATGCTGCATTCAACTCGGCATTCATGCGAGACCAACATAGGTTTGATGTCATATTTTCTGATCGCTGAAGCTCTAATATCTTATACACCGTACAATTCCAAGCTTGATTTGCTGAAGGATCCAATCGTTTGGGATTGCATAG

Ace file of the UniGene biog3_v1.0_unigene14068

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8698	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar-sorting receptor 3 [Arabidopsis thaliana] ref\|NP_849955.1\| vacuolar-sorting receptor 3 [Arabidopsis thaliana] sp\|O80977.1\|VSR3_ARATH RecName: Full=Vacuolar-sorting receptor 3; Short=AtVSR3; AltName: Full=BP80-like protein a'; Short=AtBP80a'; AltN	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	vacuolar-sorting receptor 7-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	80%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	80%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	80%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	80%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	80%
Blast2go	receptor activity	GO:0004872	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	80%
Blast2go	Golgi transport complex	GO:0017119	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX7

Fln msg: your sequence is shorter than subject: 108 - 628

Fln protein: DECKERTACQCSDCTCKNKWGGYDCKCKGDLLYIAAHDTCIARISSRFGWVLAILVIACLAGFATIGYVFYKYRLRSYMDSEIMAIMSQYMPLDQNEAHQPLQQSSA*

Protein Length: 109

Fln nts: GATGAATGCAAGGAGAGAACTGCTTGCCAGTGCAGTGACTGTACTTGCAAGAATAAATGGGGTGGATATGATTGCAAATGCAAGGGGGATCTTTTGTACATTGCAGCACATGATACTTGCATTGCTAGGATTTCTTCAAGATTTGGCTGGGTTTTGGCAATCCTTGTTATAGCCTGCTTAGCGGGTTTTGCAACTATTGGTTATGTGTTCTACAAGTACAGACTTCGGTCGTACATGGACTCTGAAATCATGGCTATCATGTCTCAATATATGCCATTGGACCAAAATGAGGCTCATCAACCTCTACAACAAAGTTCAGCATGA___GGTTGTGCCGTTTTGTGATTTATCCAAGAATGCTGCATTCAACTCGGCATTCATGCGAGACCAACATAGGTTTGATGTCATATTTTCTGATCGCTGAAGCTCTAATATCTTATACACCGTACAATTCCAAGCTTGATTTGCTGAAGGATCCAATCGTTTGGGATTGCATAG

Fln Alignment:

biogeco3_mira_c6266___DECKERTACQCSDCTCKNKWGGYDCKCKGDLLYIAAHDTCIARISSRFGWVLAILVIACLAGFATIGYVFYKYRLRSYMDSEIMAIMSQYMPLDQNEAHQPLQQSS
B8LPX7__________________DECKERTACQCRDCGCKNKWGGYDCKCKGNLLYIADQDTCIARNSSRFGWFLTLLVLASLVGIGTAGYVFYKYRLRSYMDSEIMAIMSQYMPLDQNEAHQPLQQSS

SNPs (tot: 3)

Position	A %	G %	T %	Probability
153	40	60		1.0
154	40		60	1.0
157		40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain