SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14034

Length: 296 nt

UniGene Fasta

>biog3_v1.0_unigene14034
GCCAAACGTGGAGTCGCTGAAGAAAATGAAGGGGAATTAAGAGATGCAGAGTTGTTTAGTTACGAGGAATTGAAATGCATGGCATATCTCCATGGTGCCCTGTGCGAGTCAATGAGATTGTACCCTCCCATCCCTCTTGACACCAAAATTGCTTCTGGGGACGATGTGTTACCAGATGGAACAGTTGTACGCAAAGGGTGGTTCGTAGCTTACAATATCTATTCAATGGGGAGATGGAAAGCATCTGGGGTAAAGATTTCATGGAGTTCAGGCCAGAGAGATGGCTGAAAGTGGAC

Ace file of the UniGene biog3_v1.0_unigene14034

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13825	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cytochrome P450 [Oryza sativa Japonica Group] gb\|EAY89085.1\| hypothetical protein OsI_10573 [Oryza sativa Indica Group]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	medium chain fatty acid hydroxylase	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	68%
Blast2go	iron ion binding	GO:0005506	Molecular Function	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg: Overlapping hits, possible frame ERROR between 243 and 228, Distance to subject end: 72 aas, your sequence is shorter than subject: 99 - 456

Fln protein: AKRGVAEENEGELRDAELFSYEELKCMAYLHGALCESMRLYPPIPLDTKIASGDDVLPDGTVVRKGWFVAYNIYSxxxxxxxWGKDFMEFRPERWLKVD

Protein Length: 100

Fln nts: GCCAAACGTGGAGTCGCTGAAGAAAATGAAGGGGAATTAAGAGATGCAGAGTTGTTTAGTTACGAGGAATTGAAATGCATGGCATATCTCCATGGTGCCCTGTGCGAGTCAATGAGATTGTACCCTCCCATCCCTCTTGACACCAAAATTGCTTCTGGGGACGATGTGTTACCAGATGGAACAGTTGTACGCAAAGGGTGGTTCGTAGCTTACAATATCTATTCAxxxxxxxxxxxxxxxxxxxxxTGGGGTAAAGATTTCATGGAGTTCAGGCCAGAGAGATGGCTGAAAGTGGAC

Fln Alignment:

biogeco3_mira_c6095___LFSYEELKCMAYLHGALCESMRLYPPIPLDTKIASGDDVLPDGTVVRKGWFVAYNIYSMxxxxxIWGKDFMEFRPERWLK
B8LML7__________________VFDFDELKGMQYLHAALCESMRLWPPVPVDTKVAATDDVLPDGTVVPRGWFVSYSIYSMxxxxxIWGGDFMDFRPERWLK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
51	33		66		0.997464
176	25	75			0.996473
177		75		25	0.996473
178	75		25		0.996473
179			75	25	0.996473
230	33			66	0.997458
233	66			33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain