SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14031

Length: 379 nt

UniGene Fasta

>biog3_v1.0_unigene14031
GCTATGAAGAAGATGATGAATGATAAATGTCTTGTGCGGCATCTTTCAGCATGTGAGACAATGGGATCGGCAACATGTATTTGTAGTGATAAGACAGGGACCCTAACAACAAATCGTATGGTAGTTGTAAAGGTATGGATTACTAACAATGTCAAGAAGATTGGAAGTGTTAAGGAAGGTGAGAGTCTGAGATCTGAAATCCATGGAAGTGTGTTGAAATTGCTTTTGCAGTGCATATTCCAGAATACAGGGGGTGAGGTGGTGATTAGTGAAGAGGGAAAACTTGAAATTCTAGGGACACCGACTGAGTCTGCTTTGCTAGAGTTTGGCTTATCATTGGGTGGAAGCTTTGCGACAGAGCGCAGTGAATCCAGAATAA

Ace file of the UniGene biog3_v1.0_unigene14031

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5137	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9IHW7_POPTR	-	-	73%
FL-Next	sp=Calcium-transporting ATPase 1, plasma membrane-type; Oryza sativa subsp. japonica (Rice).	-	-	65%
Blast2go	autoinhibited calcium atpase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	85%
Blast2go	Carbonate dehydratase.	EC:4.2.1.1	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion transmembrane transport	GO:0070588	Biological Process	85%
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	85%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	85%
Blast2go	response to carbon dioxide	GO:0010037	Biological Process	85%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	85%
Blast2go	carbonate dehydratase activity	GO:0004089	Molecular Function	85%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	85%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2QMX9

Fln msg: Distance to subject end: 468 aas, your sequence is shorter than subject: 126 - 1020

Fln protein: AMKKMMNDKCLVRHLSACETMGSATCICSDKTGTLTTNRMVVVKVWITNNVKKIGSVKEGESLRSEIHGSVLKLLLQCIFQNTGGEVVISEEGKLEILGTPTESALLEFGLSLGGSFATERSESRI

Protein Length: 127

Fln nts: GCTATGAAGAAGATGATGAATGATAAATGTCTTGTGCGGCATCTTTCAGCATGTGAGACAATGGGATCGGCAACATGTATTTGTAGTGATAAGACAGGGACCCTAACAACAAATCGTATGGTAGTTGTAAAGGTATGGATTACTAACAATGTCAAGAAGATTGGAAGTGTTAAGGAAGGTGAGAGTCTGAGATCTGAAATCCATGGAAGTGTGTTGAAATTGCTTTTGCAGTGCATATTCCAGAATACAGGGGGTGAGGTGGTGATTAGTGAAGAGGGAAAACTTGAAATTCTAGGGACACCGACTGAGTCTGCTTTGCTAGAGTTTGGCTTATCATTGGGTGGAAGCTTTGCGACAGAGCGCAGTGAATCCAGAATAA

Fln Alignment:

biogeco3_mira_c6068___AMKKMMNDKCLVRHLSACETMGSATCICSDKTGTLTTNRMVVVKVWITNNVKKIGSVKEGESLRSEIHGSVLKLLLQCIFQNTGGEVVISEEGKLEILGTPTXXXXXXXXXXXXXXXXTERSESRI
Q2QMX9__________________AMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICGNIKEVNNPKNASDLCSELPETVVKTLLESIFNNTGGEVVIDQDGKYQILGTPTETALLEFALSLGGNFKAKRDETKI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
35	33			66	0.997452
36	33		66		0.997452
37		66		33	0.997452
39			66	33	0.997452
69	33		66		0.997452
116	33		66		0.997452
130	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain