SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14029

Length: 224 nt

UniGene Fasta

>biog3_v1.0_unigene14029
GAGGCAATTGCACGACTTGGTGATGCATCCGATGAAGAAGATGGTCGGATGCTTCATCCTAATTCTTCCCATATATACATCAGCCAAGAAAGATTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAATCTGGGTTATAGTGAAGAAGGCATAGCTCAAGTTAGTAGAAGGGAAGGTTCAGTCAGGGAACCTATGCTTGGGGCAGACATTATTGCTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene14029

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10349	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] dbj\|BAB01962.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE75157.1\| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]	-	-	2.0e-33	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	emsy n terminus domain-containing protein	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tudor-like, plant	IPR014002	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA46

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 74 - 497

Fln protein: EAIARLGDASDEEDGRMLHPNSSHIYISQERLWGNRQAKGSQNLGYSEEGIAQVSRREGSVREPMLGADIIALT

Protein Length: 75

Fln nts: GAGGCAATTGCACGACTTGGTGATGCATCCGATGAAGAAGATGGTCGGATGCTTCATCCTAATTCTTCCCATATATACATCAGCCAAGAAAGATTGTGGGGAAATAGGCAAGCAAAAGGAAGTCAAAATCTGGGTTATAGTGAAGAAGGCATAGCTCAAGTTAGTAGAAGGGAAGGTTCAGTCAGGGAACCTATGCTTGGGGCAGACATTATTGCTTTGACATT

Fln Alignment:

biogeco3_mira_c6062___EAIARLGDASD--EEDGRMLHPNSSHIY-ISQERLWGNRQAKGSQNLGYSEEGIAQVSRREGSVREPMLGADIIA
D5AA46__________________DAIARLAEASDGESEDGR--HPLPSHTHSIDRERGWRNMQYNGNQHTADDEDDTAGDGRAEGSDGEPMIGEGGVA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
17	25			75	0.99649
18	25			75	0.99649
19			75	25	0.99649
113		33	66		0.997452
196	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain