SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14026

Length: 555 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14026
AACAATAGTCTAATACAAGCCCCTTCAGCCTTTCATCGGCACGTTAGTTGATGGGTTACATATGTAGTGTTATGGCTATTTGAGCTCCACAGTGGCAGGAAGAGAGTAGCACCGGCCCGGTTCATCAGTGCCAGAGCATGATATGGAAGAATTGAAGGTTCATTTGCCACCGGTACCTATACATGTTGTCACAGAAGCATCACAACTTCCATGTGCATTTCTTGAACCTTCTCCTGAAAGGCAACTTGTGATCGGCTTTGATTGTGAGGGTGTTGACCTAGCCCGATATGGTCGTCTTTGTATCATGCAGCTTGCTTTTGAGGATGCTGTGTATCTAGTTGATGCAGTTGAGGGTGGAGGCTTGCTAATGCAGGCTTGCAAGCCTGCTCTAGAATCTGTTCATGTGACTAAAGTTGTTCATGATTGCAAACGTGACAGTGAGGCATTGTATTTCCAGTATGGGATTAAATTAAATAATGTTGTTGACACCCAGATTGCATATTCACTTATTGAGGAACAAGAAGGCAGAAAGTGGGCTCCTGATGAGTATATATC

Ace file of the UniGene biog3_v1.0_unigene14026 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25392	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	3'-5' exonuclease domain-containing protein-like [Solanum tuberosum]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	3 -5 exonuclease and kh-i domain-containing protein	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	3'-5' exonuclease domain	IPR002562	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ59

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 137 - 175

Fln protein: MEELKVHLPPVPIHVVTEASQLPCAFLEPSPERQLVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVEGGGLLMQACKPALESVHVTKVVHDCKRDSEALYFQYGIKLNNVVDTQIAYSLIEEQEGRKWAPDEYI

Protein Length: 138

Fln nts: AACAATAGTCTAATACAAGCCCCTTCAGCCTTTCATCGGCACGTTAGTTGATGGGTTACATATGTAGTGTTATGGCTATTTGAGCTCCACAGTGGCAGGAAGAGAGTAGCACCGGCCCGGTTCATCAGTGCCAGAGCATGAT_-_ATGGAAGAATTGAAGGTTCATTTGCCACCGGTACCTATACATGTTGTCACAGAAGCATCACAACTTCCATGTGCATTTCTTGAACCTTCTCCTGAAAGGCAACTTGTGATCGGCTTTGATTGTGAGGGTGTTGACCTAGCCCGATATGGTCGTCTTTGTATCATGCAGCTTGCTTTTGAGGATGCTGTGTATCTAGTTGATGCAGTTGAGGGTGGAGGCTTGCTAATGCAGGCTTGCAAGCCTGCTCTAGAATCTGTTCATGTGACTAAAGTTGTTCATGATTGCAAACGTGACAGTGAGGCATTGTATTTCCAGTATGGGATTAAATTAAATAATGTTGTTGACACCCAGATTGCATATTCACTTATTGAGGAACAAGAAGGCAGAAAGTGGGCTCCTGATGAGTATATATC

Fln Alignment:

biogeco3_mira_c6056___MEELKVHLPPVPIHVVTEASQLPCAFLEPSPERQLVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVEGGGLLMQACKPALESVHVTKVVHDCKRDSEALYFQYGIKLNNVVDTQIAYSLIEEQEGRKWAPDEYI
B8LQ59__________________MEELKVHLAPIPIHIVTEASQLPCAFLEPSPERQLVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHDCKRDSEALYFQYGIKLNNVVDTQIAYPLIEEQEGRKWAPDEYI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
469		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain