SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14003

Length: 1004 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene14003

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10113	28/29
SustainPine v2.0	sp_v2.0_unigene80049	1/29

Source	Descriptions	Term	Type	Identity
AutoFact	EF-Hand containing protein-like n=3 Tax=Arabidopsis RepID=Q9T0I9_ARATH	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	ef-hands-containing protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRU9

Fln msg: your sequence is shorter than subject: 250 - 314

Fln protein: SSFPFLFLTNTHVLMNHVGSTGIRDKSLLLIT*LIVMENSKPSLEIALGKITVEQGMPPASDPWVMEKIVKPAAESCGFHQLINPEARVSAEEFVEALRNVALEVASRLEKSPVTVARSEKTYDGNSIRKFVKKKDEVDKALQTIWKALPKDPRGTLPREYLRVALDMIGPAAGLPPLGVVEQMDRVVSEIFKMVEADEGGVLKQNEFNKLVLEILGSLMLQLQGNPITVSSHAVVKSDEHDIDFLPQL*

Protein Length: 251

Fln nts: ATCTAGCTTCCCCTTTCTTTTCTTGACAAATACACATGTTTTGATGAATCACGTTGGAAGCACGGGAATCAGAGACAAATCACTCTTATTAATTACTTAATTAATTGTTATGGAAAACTCTAAACCGTCTCTGGAAATAGCTTTGGGAAAGATTACAGTGGAGCAAGGCATGCCTCCCGCCTCTGATCCATGGGTGATGGAGAAGATAGTAAAACCGGCGGCAGAGTCGTGCGGGTTCCATCAGCTAATAAATCCGGAGGCACGTGTGAGTGCCGAGGAATTTGTGGAGGCGCTCCGCAATGTGGCGTTGGAAGTGGCGTCGCGACTGGAGAAATCGCCGGTGACGGTGGCGCGCAGCGAGAAAACCTACGACGGTAATTCCATCCGAAAGTTTGTGAAGAAGAAAGATGAGGTAGATAAGGCTTTGCAGACGATATGGAAAGCATTGCCCAAGGACCCTCGGGGAACTTTGCCGAGAGAGTACCTTCGTGTTGCATTGGACATGATAGGCCCAGCTGCTGGCTTACCACCGTTGGGAGTAGTTGAACAGATGGATCGCGTTGTTTCTGAAATATTTAAAATGGTGGAAGCAGACGAGGGTGGAGTGTTGAAGCAGAATGAATTCAATAAGCTGGTACTGGAGATTCTGGGCAGCCTTATGCTTCAACTCCAGGGAAATCCAATCACTGTTTCTTCCCACGCTGTTGTTAAGTCTGATGAGCATGACATTGACTTCCTTCCTCAGCTCTGA___TGATATTGGTATATATAGATATGTATACACAGCTTCCAGTGGCTCTACATCATGCTCTACCCGGCCCTATGCCTGTTCTTGGAAAATAGATCAATAGTGGAGCATTAAGTCCTATTATTATTAATAGGAAAATAGATTAGTGGAGCATTAAATCTTATTATTATTGTTATTGGCATTTCAATAGGGTTTTACCATTGCACGTTTCTTGGTGGCCCCATGTTGAATCTCTGGCCTGTTTGGTGTATGCCTATGC

Fln Alignment:

biogeco3_mira_c5994___LFLTNTHVLMNHVGSTGIRDKSLLLIT*LIVMENSKPSLEIALGKITVEQGMPPASDPWVMEKIVKPAAESCGFHQLINPEARVSAEEFVEALRNVALEVASRLEKSPVTVARSEKTYDGNSIRKFVKKKDEVDKALQTIWKALPKDPRGTLPREYLRVALDMIGPAAGLPPLGVVEQMDRVVSEIFKMVEADEGGVLKQNEFNKLVLEILGSLMLQLQGNPITVSSHAVVKS--DEHDIDFLPQL
A9NRU9__________________LITIDGRLLHNYARSPALEFDALATFT---EADNSKPSLEKALGNLTVEQGMPPSSDPWVMEKIVKPAAASCGFHRLSNPERSVGREEFVEAFRNVVLEVASRLEKLPVTVAHSEKIYDGKSIQKFVRKKDELDQALQMIWKSLPKDPRGTLPREYLRVGLDMIGPAAGLPPLGSVEQMDRVVSEIFKMVEADEGGVLKQNEFNKLILEILGSLMLQLEGNPILVSSNAAVKPVVESDKSDFLPQL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
791	25	75			0.996473
792	75			25	0.996473
823	20	80			0.995493
824	20	80			0.995493
825			80	20	0.995493
827		80		20	0.995493
882		20		80	0.995498

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain