SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13991

Length: 454 nt

UniGene Fasta

>biog3_v1.0_unigene13991
CAATGCTGTAAGAACGAGTTTTGAGGGAATATCGATTTTATCTATAAAGAGTTCTCATGTGGCATTCTGCCACTTCTAAAGGACCTGCGAACACTAATATCCAGGGATGTAATCACGTGCATCCAATGTAGGCCTCTTTATTGCGTGGAAGCTGTCATCGATACTCTTGCCAGAGGATCGCGTTGCTGCATTATTTGTTGTTGGACTATCGCTTTCAGATGATGGTGAAAGTGATGAACAAGTTGTTCTTGTGAGCCACAGTGGCATGTTGAACAGAATTATGGTTCGAGACATTTCTATCCAGTCGAGAACTGCCAAGGGTGTGAGACTAATGAGACTAGATTATGGTGGCAAGATTCAGTCAGTTTCTGTAGTAGGTCCTTCAGAAATTCACAGCGATGGACCTGAACTGGAAGCAGTTAATCCCTAGTTGCTCTTATTTTTCAAGTACATT

Ace file of the UniGene biog3_v1.0_unigene13991

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3951	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	dna gyrase subunit a	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	78%
Blast2go	DNA topological change	GO:0006265	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	78%
Blast2go	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	78%
Blast2go	nucleoid	GO:0009295	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%
Blast2go	chromosome	GO:0005694	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 143 - 183

Fln protein: NAVRTSFEGISILSIKSSHVAFCHF*RTCEH*YPGM*SRASNVGLFIAWKLSSILLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMLNRIMVRDISIQSRTAKGVRLMRLDYGGKIQSVSVVGPSEIHSDGPELEAVNP*

Protein Length: 144

Fln nts: CAATGCTGTAAGAACGAGTTTTGAGGGAATATCGATTTTATCTATAAAGAGTTCTCATGTGGCATTCTGCCACTTCTAAAGGACCTGCGAACACTAATATCCAGGGATGTAATCACGTGCATCCAATGTAGGCCTCTTTATTGCGTGGAAGCTGTCATCGATACTCTTGCCAGAGGATCGCGTTGCTGCATTATTTGTTGTTGGACTATCGCTTTCAGATGATGGTGAAAGTGATGAACAAGTTGTTCTTGTGAGCCACAGTGGCATGTTGAACAGAATTATGGTTCGAGACATTTCTATCCAGTCGAGAACTGCCAAGGGTGTGAGACTAATGAGACTAGATTATGGTGGCAAGATTCAGTCAGTTTCTGTAGTAGGTCCTTCAGAAATTCACAGCGATGGACCTGAACTGGAAGCAGTTAATCCCTAG___TTGCTCTTATTTTTCAAGTACATT

Fln Alignment:

biogeco3_mira_c5962___LLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMLNRIMVRDISIQSRTAKGVRLMRLDYGGKIQSVSVVGPSEIHSDGPELEAVNP
D5ABZ8__________________LLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKGVRLMRLEHGGKIQSVSVVGPSEVQSDGPELQAVVP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
181	33	66			0.997471
182	33		66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain