SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13973

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13973
TGTAGAACAAGAGGTTTGGCCACAAAGTTGAAGTTGTCCCAGATGTCGTCTTTTGCCCCATCGTTTGTACCCTTCACTACCTCAACAACAGCAGCAAAACCATGTAGGAGTGTAGTCCAGGTGCCAAGAATGGAAGCTCGCGATTTGGCAGAGCAGATGAAGGTGATGGCAGCTGCACAAAAAAGATGGGAAGCTCAGATTAGAGAAGGTAAAGTAAAGGCACTAACACCAAAGGAAGCTGGCTATGCAATACAACTTTCAGATAAAATTCTTCTTGATGTTCGTCCATCAACAGACAGAAACAAGGCTTGGGTGAAAGGCTCCATTTGGATCCCGGTTT

Ace file of the UniGene biog3_v1.0_unigene13973 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene519	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	rhodanese homology domain-containing protein [Arabidopsis thaliana] dbj\|BAE98411.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABN04793.1\| At4g24750 [Arabidopsis thaliana] gb\|AEE84952.1\| rhodanese homology domain-containing protein [Arabidopsis thalia	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	76%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D8R212

Fln msg: Distance to subject end: 161 aas, your sequence is shorter than subject: 99 - 255

Fln protein: MSSFAPSFVPFTTSTTAAKPCRSVVQVPRMEARDLAEQMKVMAAAQKRWEAQIREGKVKALTPKEAGYAIQLSDKILLDVRPSTDRNKAWVKGSIWIPV

Protein Length: 100

Fln nts: TGTAGAACAAGAGGTTTGGCCACAAAGTTGAAGTTGTCCCAG_-_ATGTCGTCTTTTGCCCCATCGTTTGTACCCTTCACTACCTCAACAACAGCAGCAAAACCATGTAGGAGTGTAGTCCAGGTGCCAAGAATGGAAGCTCGCGATTTGGCAGAGCAGATGAAGGTGATGGCAGCTGCACAAAAAAGATGGGAAGCTCAGATTAGAGAAGGTAAAGTAAAGGCACTAACACCAAAGGAAGCTGGCTATGCAATACAACTTTCAGATAAAATTCTTCTTGATGTTCGTCCATCAACAGACAGAAACAAGGCTTGGGTGAAAGGCTCCATTTGGATCCCGGTTT

Fln Alignment:

biogeco3_mira_c5885___EQMKVMAAAQKRWEAQIREGKVKALTPKEAGYAIQLSDKILLDVRPSTDRNKAWVKGSIWIPV
D8R212__________________EQMKELSAAQKRWEAQVRDGKIKALSPKEAGYAVQLSKYTLLDVRPSSERSKAWVKGSVWIPV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
85	33		66		0.997464
86	33			66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain