SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13933

Length: 233 nt

UniGene Fasta

>biog3_v1.0_unigene13933
GCCCGTTGGGAATGCCTCCGAAAGATAGAGTCGCCTACTTCTACGACGGGGATGTGGGAAGTGTCTACTTTGGCCCAAATCATCCTATGAAGCCACATCGACTGTGCATGACACACCATCTGGTCCTTTCTTATGAACTTCACAAGAAGATGGAGATCTATCGACCACACAAGGCATATCCAGTGGAACTTGCTCAGTTTCATTCAGCAGACTATGTGGAGTTCTTGCACATT

Ace file of the UniGene biog3_v1.0_unigene13933

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1009	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI	-	-	89%
FL-Next	sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	81%
Blast2go	histone deacetylase	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone deacetylase.	EC:3.5.1.98	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	93%
Blast2go	histone deacetylation	GO:0016575	Biological Process	93%
Blast2go	histone deacetylase activity (H4-K16 specific)	GO:0034739	Molecular Function	93%
Blast2go	NAD-dependent histone deacetylase activity (H3-K14 specific)	GO:0032041	Molecular Function	93%
Blast2go	NAD-dependent histone deacetylase activity (H4-K16 specific)	GO:0046970	Molecular Function	93%
Blast2go	NAD-dependent histone deacetylase activity (H3-K9 specific)	GO:0046969	Molecular Function	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Histone deacetylase	IPR003084	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8H0W2

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 74 - 426

Fln protein: MPPKDRVAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHI

Protein Length: 75

Fln nts: GCCCGTTGGGA_-_ATGCCTCCGAAAGATAGAGTCGCCTACTTCTACGACGGGGATGTGGGAAGTGTCTACTTTGGCCCAAATCATCCTATGAAGCCACATCGACTGTGCATGACACACCATCTGGTCCTTTCTTATGAACTTCACAAGAAGATGGAGATCTATCGACCACACAAGGCATATCCAGTGGAACTTGCTCAGTTTCATTCAGCAGACTATGTGGAGTTCTTGCACATT

Fln Alignment:

biogeco3_mira_c5668___MPPKDRVAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFL
Q8H0W2__________________MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQFHSPDYVEFL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
84		75		25	0.996473
177	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain