SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13917

Length: 223 nt

UniGene Fasta

>biog3_v1.0_unigene13917
AATGTGAAAGACTTGCTTGCTACAAGTTTCTGCAGGAAAGTCTTAAAGTAGCAAAGATTGCAAGTGCTGATGATATAGCATCGGGAAAGTACACAATTGATGATGTCCTACTTCCTCTTCCCGGGTCAAGGATAATTTATCCCGGAAATGATATTGCTGAAACATATCATGATCTAGCTGTAAAGGATTCGGTTAACTTGAGAGACAGCTCTCACAATACATT

Ace file of the UniGene biog3_v1.0_unigene13917

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10196	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA pseudouridine synthase d, putative n=1 Tax=Ricinus communis RepID=B9RER1_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	multisubstrate pseudouridine synthase 7-like	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA-pseudouridine synthase I.	EC:5.4.99.12	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	pseudouridine synthesis	GO:0001522	Biological Process	65%
Blast2go	RNA binding	GO:0003723	Molecular Function	65%
Blast2go	pseudouridine synthase activity	GO:0009982	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Pseudouridine synthase, TruD	IPR001656	-	-
Sma3	Pseudouridine synthase, TruD, insertion domain	IPR011760	-	-
Sma3	Pseudouridine synthase TruD, eukaryotic	IPR017091	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABC8

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 73 - 311

Fln protein: CERLACYKFLQESLKVAKIASADDIASGKYTIDDVLLPLPGSRIIYPGNDIAETYHDLAVKDSVNLRDSSHNT

Protein Length: 74

Fln nts: AATGTGAAAGACTTGCTTGCTACAAGTTTCTGCAGGAAAGTCTTAAAGTAGCAAAGATTGCAAGTGCTGATGATATAGCATCGGGAAAGTACACAATTGATGATGTCCTACTTCCTCTTCCCGGGTCAAGGATAATTTATCCCGGAAATGATATTGCTGAAACATATCATGATCTAGCTGTAAAGGATTCGGTTAACTTGAGAGACAGCTCTCACAATACATT

Fln Alignment:

biogeco3_mira_c5584___FLQESLKVAKIASADDIASGKYTIDDVLLPLPGSRIIYPGNDIAETYHDLAVKDSVNLRDSSHN
D5ABC8__________________FSQESLKVAKIANADDIASGKYTIDDILLPLPGSRIIYPGNDIAETYHDLALKDLVDLRDSSHN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain