SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13898

Length: 537 nt

UniGene Fasta

>biog3_v1.0_unigene13898
AATGTTGTTAGCCTGAATATTGTGAAAAAGTTTATTTTATTTGGTGACGTTCATAAAAGTATATATTTTCTAAATTGGAAAGAGGATGGCGCACAGCTGTGTTTGTTAGCAAAGGATTTTGGTTCACTTAATTGTTATGCTACGGAGTTCCTAATTGATGGAACTACTCTGAGCCTTGTTGTTTCAGATGATCAGAAAAACATCCAGATCTTCTATTATGCACCCAAAAGCATGGAAAGTTGGAAAGGACAGAAGCTTCTTCCTAGGGCTGAGTTCCATGTGGGTGCACATGTATCAAAGTTTTTACGCTTACAGATGCTTCCTACATCACTTTCTGATCGAACCAATCGGTATGCTCTTCTATGTGGCACGCTTGATGGAAGCATTGGCTGTGTTGCTCCTCTTGATGAGCTAACTTTTCGGAGGCTCCAAACATTGCAGCGCAAGCTGGTAGATGCTGTCCCTCATGTAGCTGGGTTAAATCCAAGAGCATTCAGACGATTCCGTTCCAATGGGAATGCTCATCGGCCGGGTCCT

Ace file of the UniGene biog3_v1.0_unigene13898

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4208	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=CPSF 160 kDa subunit emb\|CAD39979.2\| OSJNBa0032B23.5 [Oryza sativa Japonica Group]	-	-	76%
FL-Next	sp=Probable cleavage and polyadenylation specificity factor subunit 1; Oryza sativa subsp. japonica (Rice).	-	-	78%
Blast2go	cleavage and polyadenylation specificity factor subunit 1-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	mRNA polyadenylation	GO:0006378	Biological Process	85%
Blast2go	mRNA cleavage	GO:0006379	Biological Process	85%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	monolayer-surrounded lipid storage body	GO:0012511	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XWP1

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 179 - 1441

Fln protein: NVVSLNIVKKFILFGDVHKSIYFLNWKEDGAQLCLLAKDFGSLNCYATEFLIDGTTLSLVVSDDQKNIQIFYYAPKSMESWKGQKLLPRAEFHVGAHVSKFLRLQMLPTSLSDRTNRYALLCGTLDGSIGCVAPLDELTFRRLQTLQRKLVDAVPHVAGLNPRAFRRFRSNGNAHRPGP

Protein Length: 180

Fln nts: AATGTTGTTAGCCTGAATATTGTGAAAAAGTTTATTTTATTTGGTGACGTTCATAAAAGTATATATTTTCTAAATTGGAAAGAGGATGGCGCACAGCTGTGTTTGTTAGCAAAGGATTTTGGTTCACTTAATTGTTATGCTACGGAGTTCCTAATTGATGGAACTACTCTGAGCCTTGTTGTTTCAGATGATCAGAAAAACATCCAGATCTTCTATTATGCACCCAAAAGCATGGAAAGTTGGAAAGGACAGAAGCTTCTTCCTAGGGCTGAGTTCCATGTGGGTGCACATGTATCAAAGTTTTTACGCTTACAGATGCTTCCTACATCACTTTCTGATCGAACCAATCGGTATGCTCTTCTATGTGGCACGCTTGATGGAAGCATTGGCTGTGTTGCTCCTCTTGATGAGCTAACTTTTCGGAGGCTCCAAACATTGCAGCGCAAGCTGGTAGATGCTGTCCCTCATGTAGCTGGGTTAAATCCAAGAGCATTCAGACGATTCCGTTCCAATGGGAATGCTCATCGGCCGGGTCCT

Fln Alignment:

biogeco3_mira_c5532___NVVSLNIVKKFILFGDVHKSIYFLNWKEDGAQLCLLAKDFGSLNCYATEFLIDGTTLSLVVSDDQKNIQIFYYAPKSMESWKGQKLLPRAEFHVGAHVSKFLRLQMLPTS--LSDRTNRYALLCGTLDGSIGCVAPLDELTFRRLQTLQRKLVDAVPHVAGLNPRAFRRFRSNGNAHRPGP
Q7XWP1__________________HVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMVESWKGQKLLSRAEFHVGAHITKFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKGHRPGP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
188	20		80		0.995496
294	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain