SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13885

Length: 492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13885
TGTGGGGACGATGGATCCCAATATCGGAAAGGCCCAGATTCGCTGCGAGGAACCAAGCCGTCGGCCATTCTGAGGCTCCCTTGTTATTGCTGTGCACCGGGTTGCAGAAATAACATACACCACCCGCGTTCGAAACCCCTCAAGGACTTCCGAACGCTGCAGACTCACTACAAGCGCAAGCACGGCATGAAGCCCTTCGCGTGCCGCAAATGCAGCAAGGCGTTTGCCGTTCGGGGAGACTGGCGGACCCACGAGAAAAACTGCGGGAAGCTCTGGTTCTGCACTTGTGGTTCAGATTTCAAGCACAAACGCTCGCTGAAAGACCATATTCGTGCCTTTGGAAATGGTCACGACACTCACGGGGTCGAGACCTGTGAAGACGACGACGATACACCTTCTGAAGAGGTGGACGATGACTATTCGGCTGGTTCTCACTAGTATTTTAACTAAACTTCACAATATTGCAGAATGTGAGGAATATTCCAGGACATT

Ace file of the UniGene biog3_v1.0_unigene13885 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5281	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein transparent testa 1-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	79%
Blast2go	intracellular	GO:0005622	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQR7

Fln msg: your sequence is shorter than subject: 146 - 225

Fln protein: CGDDGSQYRKGPDSLRGTKPSAILRLPCYCCAPGCRNNIHHPRSKPLKDFRTLQTHYKRKHGMKPFACRKCSKAFAVRGDWRTHEKNCGKLWFCTCGSDFKHKRSLKDHIRAFGNGHDTHGVETCEDDDDTPSEEVDDDYSAGSH*

Protein Length: 147

Fln nts: TGTGGGGACGATGGATCCCAATATCGGAAAGGCCCAGATTCGCTGCGAGGAACCAAGCCGTCGGCCATTCTGAGGCTCCCTTGTTATTGCTGTGCACCGGGTTGCAGAAATAACATACACCACCCGCGTTCGAAACCCCTCAAGGACTTCCGAACGCTGCAGACTCACTACAAGCGCAAGCACGGCATGAAGCCCTTCGCGTGCCGCAAATGCAGCAAGGCGTTTGCCGTTCGGGGAGACTGGCGGACCCACGAGAAAAACTGCGGGAAGCTCTGGTTCTGCACTTGTGGTTCAGATTTCAAGCACAAACGCTCGCTGAAAGACCATATTCGTGCCTTTGGAAATGGTCACGACACTCACGGGGTCGAGACCTGTGAAGACGACGACGATACACCTTCTGAAGAGGTGGACGATGACTATTCGGCTGGTTCTCACTAG___TATTTTAACTAAACTTCACAATATTGCAGAATGTGAGGAATATTCCAGGACATT

Fln Alignment:

biogeco3_mira_c5493___GSQYRKGPDSLRGTKPSAIL-RLPCYCCAPGCRNNIHHPRSKPLKDFRTLQTHYKRKHGMKPFACRKCSKAFAVRGDWRTHEKNCGKLWFCTCGSDFKHKRSLKDHIRAFGNGH
A9NQR7__________________GSQYRKGPESLRGTQPTAILLRLPCYCCTQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCCKCNKTFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRAFGQGH

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
165	33			66	0.997464
169			66	33	0.997471
247		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain