SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13853

Length: 260 nt

UniGene Fasta

>biog3_v1.0_unigene13853
AATGTGTTCTGTTTGGCTCGTGACCGCGGCAGCGGAGTCATTGGCGGGGAAAAGGATATCGCCTACAGGCTTGCTGAGCCGGATAAAGAAAATTTAAAGGAGGGGCTGAGGAGATGCCTCCGGATCTTGATCGCTGCCGGTGCCACAGAGGTGGGGACGCATCGTAGCGACGGGGAGCGTCTGATTGTTAAGGGCGCCACCGATGATGAAATTGAGGAGTTCTTGAACAACCAGGGGAAGGGAAGGCGAGGAGTGTGGCC

Ace file of the UniGene biog3_v1.0_unigene13853

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19155	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol oxidase (Fragment) n=1 Tax=Glycine max RepID=C6F118_SOYBN	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	long-chain-alcohol oxidase fao1-like	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.1.3.2-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	67%
Blast2go	alcohol metabolic process	GO:0006066	Biological Process	67%
Blast2go	response to cold	GO:0009409	Biological Process	67%
Blast2go	long-chain-alcohol oxidase activity	GO:0046577	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase, long-chain fatty	IPR012400	-	-
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ84

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 86 - 743

Fln protein: NVFCLARDRGSGVIGGEKDIAYRLAEPDKENLKEGLRRCLRILIAAGATEVGTHRSDGERLIVKGATDDEIEEFLNNQGKGRRGVW

Protein Length: 87

Fln nts: AATGTGTTCTGTTTGGCTCGTGACCGCGGCAGCGGAGTCATTGGCGGGGAAAAGGATATCGCCTACAGGCTTGCTGAGCCGGATAAAGAAAATTTAAAGGAGGGGCTGAGGAGATGCCTCCGGATCTTGATCGCTGCCGGTGCCACAGAGGTGGGGACGCATCGTAGCGACGGGGAGCGTCTGATTGTTAAGGGCGCCACCGATGATGAAATTGAGGAGTTCTTGAACAACCAGGGGAAGGGAAGGCGAGGAGTGTGGCC

Fln Alignment:

biogeco3_mira_c5348___NVFCLARDRGSGVIGGEKDIAYRLAEPDKENLKEGLRRCLRILIAAGATEVGTHRSDGERLIVKGATDDEIEEFLNNQGKGRRGVW
B8LQ84__________________HVFCLARDRGSGSVGGEKDLDYRFAESDKDNLKEGLRRCVQILIAAGATEVGTHRSDGERLAVKGATDDEIEEFLNNKGKGRRGVW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
30	33	66			0.997464
34		66		33	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain