SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13845

Length: 228 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13845
TGGAGGAATTGGTTAAAGGCTGAGTCAGCATGGCTGACCTCGTGGCGCGGACTGGTCGGCATCAACAGCTGTATGAAGACGGTTACCGACTAGTCGCTGGGTGTATTCCTTATAAGTACACAGGTGCCGATGATACCTGCAATGGCAACACTAAGCAGAGATTGGAAGTTCTTATGATCACTTCACAAAGTGGACCTGGTCTTCTTTTTCCAAAGGGAGGATGACATT

Ace file of the UniGene biog3_v1.0_unigene13845 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2730	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Nudix hydrolase 13 n=3 Tax=Andropogoneae RepID=B6SQG1_MAIZE	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nudix hydrolase mitochondrial-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA97

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 125 aas, your sequence is shorter than subject: 65 - 191

Fln protein: MADLVARTGRHQQLYEDGYRLVAGCIPYKYTGADDTCNGNTKQRLEVLMITSQSGPGLLFPKGG*

Protein Length: 66

Fln nts: TGGAGGAATTGGTTAAAGGCTGAGTCAGC_-_ATGGCTGACCTCGTGGCGCGGACTGGTCGGCATCAACAGCTGTATGAAGACGGTTACCGACTAGTCGCTGGGTGTATTCCTTATAAGTACACAGGTGCCGATGATACCTGCAATGGCAACACTAAGCAGAGATTGGAAGTTCTTATGATCACTTCACAAAGTGGACCTGGTCTTCTTTTTCCAAAGGGAGGATGACATT

Fln Alignment:

biogeco3_mira_c5319___MADLVARTGRHQQLYEDGYRLVAGCIPYKYTGADDTCNGNTKQRLEVLMITSQSGPGLLFPKGG
D5AA97__________________MGDLVARTGRHQQRYEDGYRLVAGCVPYRYTLADDTCNGNTKQRLEVLMITSQSGPRLVFPKGG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
76	50			50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain