SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13826

Length: 341 nt

UniGene Fasta

>biog3_v1.0_unigene13826
AATGTTTACAGCCCAATCATCTACAAGGTGTATTTAGTAGCTCTATCTGAGCTTGGGTCGCGATTGGAAGACAGCATGTGGAAGATTTTATCCTTTGAGCCACAAGGCCCAATAGCTGCTGCTTTAGTGCATGAATCTATGGGTGTGCGCATAACGGCTTGCACTTGCATCAAAAACATTTCTCGATCTGTTAAGAATCTCCGAACCTCCCTTACGGATGAAGGTGTTGTTTTTCCTCTGTTCAAGTTGTTGGATGACGAGTCCCCAGCGGTGCAGGTTGCGGCATTGAGTGCTATCAGTAATGTTGTGCTTGATTTTACACCTCATAAAACAGTTACATT

Ace file of the UniGene biog3_v1.0_unigene13826

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7853	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb\|AAM13139.1\| unknown protein [Arabidopsis thaliana] gb\|AAP37775.1\| At1g51350 [Arabidopsis thaliana] gb\|AEE32654.1\| armadillo/beta-catenin-like repeats-containing protein [Arab	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	75%
Blast2go	armadillo repeat-containing protein 8-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R6B9

Fln msg: Distance to subject end: 533 aas, your sequence is shorter than subject: 113 - 919

Fln protein: NVYSPIIYKVYLVALSELGSRLEDSMWKILSFEPQGPIAAALVHESMGVRITACTCIKNISRSVKNLRTSLTDEGVVFPLFKLLDDESPAVQVAALSAISNVVLDFTPHKTVT

Protein Length: 114

Fln nts: AATGTTTACAGCCCAATCATCTACAAGGTGTATTTAGTAGCTCTATCTGAGCTTGGGTCGCGATTGGAAGACAGCATGTGGAAGATTTTATCCTTTGAGCCACAAGGCCCAATAGCTGCTGCTTTAGTGCATGAATCTATGGGTGTGCGCATAACGGCTTGCACTTGCATCAAAAACATTTCTCGATCTGTTAAGAATCTCCGAACCTCCCTTACGGATGAAGGTGTTGTTTTTCCTCTGTTCAAGTTGTTGGATGACGAGTCCCCAGCGGTGCAGGTTGCGGCATTGAGTGCTATCAGTAATGTTGTGCTTGATTTTACACCTCATAAAACAGTTACATT

Fln Alignment:

biogeco3_mira_c5243___EPQGPIAAALVHESMGVRITACTCIKNISRSVKNLRTSLTDEGVVFPLFKLLDDESPAVQVAALSAISNVVLDFTPHKTV
D8R6B9__________________EAQCSIAMALGHESEGVRIAACACIKSISRSVKNLRTTLTDERLVWPLFRLLNDPSPAVQASALSAVSNVVLDFTPHKAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain