SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13808

Length: 346 nt

UniGene Fasta

>biog3_v1.0_unigene13808
AATGTTATCTGGATCCCCAATGTAGGAAAGCAAATGCTTACGGGCGCCAGCTTCGCTTCTGCTGCAGCTGGATACTATGATTCTACCTCTCTCTCTCTTAATGTTCTAACTTTGGGGCAACAAGTGGAGTATTTCAGGCAGTATAAAGGCCGGATTGCGAATATGGTTGGCGCTTTTAATGCCACCAAGATAATATCAGGAGGCCTGTTTGGGATAAGCATGGGAACTAATGACTTTGCTCTTAATTATTATATGAATCCTATTCTAAGTGAAGAATACAGTGTAACGCAGTTCCAGGATCTTCTGTTACATTCTCTTTCGCATTTATACAGAGTATATACACATT

Ace file of the UniGene biog3_v1.0_unigene13808

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29138	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SN70_VITVI	-	-	2.0e-38	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	zinc finger	-	-	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLX0

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 115 - 359

Fln protein: NVIWIPNVGKQMLTGASFASAAAGYYDSTSLSLNVLTLGQQVEYFRQYKGRIANMVGAFNATKIISGGLFGISMGTNDFALNYYMNPILSEEYSVTQFQDLLLHSLSHLYRVYTH

Protein Length: 116

Fln nts: AATGTTATCTGGATCCCCAATGTAGGAAAGCAAATGCTTACGGGCGCCAGCTTCGCTTCTGCTGCAGCTGGATACTATGATTCTACCTCTCTCTCTCTTAATGTTCTAACTTTGGGGCAACAAGTGGAGTATTTCAGGCAGTATAAAGGCCGGATTGCGAATATGGTTGGCGCTTTTAATGCCACCAAGATAATATCAGGAGGCCTGTTTGGGATAAGCATGGGAACTAATGACTTTGCTCTTAATTATTATATGAATCCTATTCTAAGTGAAGAATACAGTGTAACGCAGTTCCAGGATCTTCTGTTACATTCTCTTTCGCATTTATACAGAGTATATACACATT

Fln Alignment:

biogeco3_mira_c5146___GKQMLTXXXXXXXXXXXXDSTSLSLNVLTLGQQVEYFRQYKGRIANMVGAFNATKIISGGLFGISMGTNDFALNYYMNPILSEEYSVTQFQDLLLHSLS
A9NLX0__________________GPRILTGASFASAGSGYDDITPLTVNVLTLEQQLDNFKLYREKLVNMLGPENSSEVISGALFVISMGTNDFSNNYYLNPSTRAHYTIDEFQDHVLHTLS

SSRs (tot: 1)

Start position	End position	Sequence	Length
87	98	CT CT CT CT CT CT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain