SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13803

Length: 371 nt

UniGene Fasta

>biog3_v1.0_unigene13803
AATGTCCACAGGCAAGGCAGGGTGTGGAGTGCAAGTAAAGCTGTAAAACTGCAGACGTTGTCTAAGGTGTTGATACTGCACTTAATGCGCTTCAGCTTCGGAAGTACCGGCAGCGGAAAACTACATAAACCTGTTCTCTTCAGTCCTGAGATTGTTCTAAGTCGTGATCTGTTGGTCTCTCCAACAACAGAGGGTCGGAGATATGAATTAGTAGCTACTGTAAGCCACCATGGCAAGGACCCTTCCAAGGGGCATTATACAGCCGACACGAAACGTCCCAATGGCCAGTGGCTTCGATTTGATGATGCAGCTGTGTCTGTTGTGAGTTTGAACAAAGTGTTGCATGATCAAGCGTTCCTTTTATTTATAAA

Ace file of the UniGene biog3_v1.0_unigene13803

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3188	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQ20_VITVI	-	-	63%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	ubiquitin carboxyl-terminal hydrolase 24	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	75%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	75%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	0.0	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUT3

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 123 - 480

Fln protein: NVHRQGRVWSASKAVKLQTLSKVLILHLMRFSFGSTGSGKLHKPVLFSPEIVLSRDLLVSPTTEGRRYELVATVSHHGKDPSKGHYTADTKRPNGQWLRFDDAAVSVVSLNKVLHDQAFLLFI

Protein Length: 124

Fln nts: AATGTCCACAGGCAAGGCAGGGTGTGGAGTGCAAGTAAAGCTGTAAAACTGCAGACGTTGTCTAAGGTGTTGATACTGCACTTAATGCGCTTCAGCTTCGGAAGTACCGGCAGCGGAAAACTACATAAACCTGTTCTCTTCAGTCCTGAGATTGTTCTAAGTCGTGATCTGTTGGTCTCTCCAACAACAGAGGGTCGGAGATATGAATTAGTAGCTACTGTAAGCCACCATGGCAAGGACCCTTCCAAGGGGCATTATACAGCCGACACGAAACGTCCCAATGGCCAGTGGCTTCGATTTGATGATGCAGCTGTGTCTGTTGTGAGTTTGAACAAAGTGTTGCATGATCAAGCGTTCCTTTTATTTATAAA

Fln Alignment:

biogeco3_mira_c5118___YELVATVSHHGKDPSKGHYTADTKRPNGQWLRFDD
A9NUT3__________________YDLVAVLTHKGRSADSGHYVAWVKQENGKWIEFDD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
76	33	66			0.997452
216	25		75		0.996473
340			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain