SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13779

Length: 393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13779
GTGAGGGAGGCTGCAGACGCAGGAGGTGCAGCTGAAGATATCACCCCTGCTGGATTTAATGTTAGGACCTTGGTACATGAATATGGTGGAGGTGCATTTACTGTCTCAGGAGATGTGGTTGTGTTCTCCAACTACAAGGATCAAAGACTCTATAAGCAGTCTATCAAAGGAGACCATGCACCGATTGCACTCACTCCAGATTATGGAGCACCTGTGGTGCGTTATGCTGATGGAGTGATGGATCTTCACTTAGGCTGTTATATTACTGTAAGAGAAGACCATCGGGAAAGTGATACAAATCCAACTACAACAATTGTTTCTGTGGAGCTCAATGGGGCTGGCATATCAGAACCACATGTATTAGTCAGTGGCAGCGATTTCTATGCTTACATT

Ace file of the UniGene biog3_v1.0_unigene13779 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6030	3/4
SustainPine v2.0	sp_v2.0_unigene58476	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	acylamino-acid-releasing enzyme, putative (EC:3.4.19.1)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	acyl-peptide hydrolase-like protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	0.0	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWZ2

Fln msg: Distance to subject end: 485 aas, your sequence is shorter than subject: 131 - 721

Fln protein: VREAADAGGAAEDITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGDHAPIALTPDYGAPVVRYADGVMDLHLGCYITVREDHRESDTNPTTTIVSVELNGAGISEPHVLVSGSDFYAYI

Protein Length: 132

Fln nts: GTGAGGGAGGCTGCAGACGCAGGAGGTGCAGCTGAAGATATCACCCCTGCTGGATTTAATGTTAGGACCTTGGTACATGAATATGGTGGAGGTGCATTTACTGTCTCAGGAGATGTGGTTGTGTTCTCCAACTACAAGGATCAAAGACTCTATAAGCAGTCTATCAAAGGAGACCATGCACCGATTGCACTCACTCCAGATTATGGAGCACCTGTGGTGCGTTATGCTGATGGAGTGATGGATCTTCACTTAGGCTGTTATATTACTGTAAGAGAAGACCATCGGGAAAGTGATACAAATCCAACTACAACAATTGTTTCTGTGGAGCTCAATGGGGCTGGCATATCAGAACCACATGTATTAGTCAGTGGCAGCGATTTCTATGCTTACATT

Fln Alignment:

biogeco3_mira_c5003___ITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGDHAPIALTPDYGAPVVRYADGVMDLHLGCYITVREDHRESDTNPTTTIVSVELNGAGISEPHVLVSGSDFYAY
A9NWZ2__________________ITPAGFNVRTLVHEYGGGAFTVSGDVVVFSNYKDQRLYKQSIKGGHAPIALTPDYGAPVVRYADGVMDLHLGCYVTVREDHRESDTNPTTTIVSVELNGAGTTEPHVLVSGSDFYAF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
154	33	66			0.997452
157		66	33		0.997452
158	66			33	0.997452
244		33	66		0.997464
246			66	33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain