SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13778

Length: 427 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13778
AATGTACATAACAATTTACAACCTTACTGTGTGGAATTGAGCTTATACATTCTGGAGTAACTTGCTTTGCAGAAGCTGGAGGTCAACATGTAACCGGAATGGCCAGAGCAGTTGAATCTTTAGGTATACGTGGTTGCTTAGCACAGTCAACAATGGATGCTGGTGAGGGCTTACCAGCATTATGGGCAAAAGAGACGGCAAAATCTTCCATTCAGGTTCAAGAGAAATTATATAAGAATCTGCATGGCACTGCTGATGGACGCATTAGAGTTTGGTTTGGATTAAGACAAATTCTTAATGCAACCGATGATCTTTTGTTTCAAACAAAAGAGAGTGCAGATAAATTCAACACAGGCATTCACATGCATGTTGCAGAAATTCCTTATGAGAATGAACATGTAGTTAGAACAAGGGCAGTGAATACATT

Ace file of the UniGene biog3_v1.0_unigene13778 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10178	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Atrazine chlorohydrolase, putative n=1 Tax=Ricinus communis RepID=B9RMA1_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	amidohydrolase family protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Atrazine chlorohydrolase.	EC:3.8.1.8	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Atrazine degradation	00791		0.0	76%
Blast2go	Metabolic pathways	01100		0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	atrazine chlorohydrolase activity	GO:0018788	Molecular Function	0.0	76%
Blast2go	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	GO:0016810	Molecular Function	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amidohydrolase 1	IPR006680	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD27

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 141 - 231

Fln protein: CT*QFTTLLCGIELIHSGVTCFAEAGGQHVTGMARAVESLGIRGCLAQSTMDAGEGLPALWAKETAKSSIQVQEKLYKNLHGTADGRIRVWFGLRQILNATDDLLFQTKESADKFNTGIHMHVAEIPYENEHVVRTRAVNT

Protein Length: 142

Fln nts: AATGTACATAACAATTTACAACCTTACTGTGTGGAATTGAGCTTATACATTCTGGAGTAACTTGCTTTGCAGAAGCTGGAGGTCAACATGTAACCGGAATGGCCAGAGCAGTTGAATCTTTAGGTATACGTGGTTGCTTAGCACAGTCAACAATGGATGCTGGTGAGGGCTTACCAGCATTATGGGCAAAAGAGACGGCAAAATCTTCCATTCAGGTTCAAGAGAAATTATATAAGAATCTGCATGGCACTGCTGATGGACGCATTAGAGTTTGGTTTGGATTAAGACAAATTCTTAATGCAACCGATGATCTTTTGTTTCAAACAAAAGAGAGTGCAGATAAATTCAACACAGGCATTCACATGCATGTTGCAGAAATTCCTTATGAGAATGAACATGTAGTTAGAACAAGGGCAGTGAATACATT

Fln Alignment:

biogeco3_mira_c5001___TTLLCGIELIHSGVTCFAEAGGQHVTGMARAVESLGIRGCLAQSTMDAGEGLPALWAKETAKSSIQVQEKLYKNLHGTADGRIRVWFGLRQILNATDDLLFQTKESADKFNTGIHM
D5AD27__________________STLLCGIELIHSGVTCFAEAGGQHVPGIARAVECLGIRGCLAQSTMDAGEGLPSSWEKETAKSSIQIQEELYKNLHGTADGRIRVWFGLRQILNATDDLLFLTKEIADKFNTGIHM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
323	33		66		0.997452
325	33			66	0.997452
326		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain