SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13762

Length: 492 nt

UniGene Fasta

>biog3_v1.0_unigene13762
AATGTGCTGATCTACTTGGTCTAATGATGTCTGCTAAGAATGCACAAGATGTACGTATGACTATGGAGGAAATCGTTGATGAATGCAAGACTTTCTACTTTGCGGGACATGAAACTACAGCAAACCTGTTGACATGGACCATGGTATTACTGGGAATGCATCAAGACTGGCAGGCGCATGGACGCAAAGAGGTGTTGGAAGTATGTGGAAAAAATGCTCCGGATGCAGATAGCGTGAATCGTCTTAAGATTGTGGGAATGATTCTAAATGAGGCCCTCAGACTTTACCCACCAGCAGTGTTTCTGCGACGACATACATGCAAACCAATGAAGCTTGGAAGGCTCTCAATTCCTGCAGGCATTGATCTTATGCTTCCAATCCTTGCAATCCACCATGATCCATCGTTGTGGGGAAATGATGCAAAAGAGTTTAACCCATCACGATTTGGTGAGGGAATTGCAAAAGCGCATTGCATCCATTCGCATTCATGCC

Ace file of the UniGene biog3_v1.0_unigene13762

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9038	4/5
SustainPine v2.0	sp_v2.0_unigene36064	1/5

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SEM0_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	cytochrome p450	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	67%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	67%
Blast2go	Methane metabolism	00680	67%
Blast2go	Phenylpropanoid biosynthesis	00940	67%
Blast2go	Biosynthesis of phenylpropanoids	01061	67%
Blast2go	Metabolic pathways	01100	67%
Blast2go	Biosynthesis of secondary metabolites	01110	67%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	67%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	67%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	67%
Blast2go	response to light stimulus	GO:0009416	Biological Process	67%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	67%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	67%
Blast2go	protein binding	GO:0005515	Molecular Function	67%
Blast2go	heme binding	GO:0020037	Molecular Function	67%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	67%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 163 - 517

Fln protein: CADLLGLMMSAKNAQDVRMTMEEIVDECKTFYFAGHETTANLLTWTMVLLGMHQDWQAHGRKEVLEVCGKNAPDADSVNRLKIVGMILNEALRLYPPAVFLRRHTCKPMKLGRLSIPAGIDLMLPILAIHHDPSLWGNDAKEFNPSRFGEGIAKAHCIHSHSC

Protein Length: 164

Fln nts: AATGTGCTGATCTACTTGGTCTAATGATGTCTGCTAAGAATGCACAAGATGTACGTATGACTATGGAGGAAATCGTTGATGAATGCAAGACTTTCTACTTTGCGGGACATGAAACTACAGCAAACCTGTTGACATGGACCATGGTATTACTGGGAATGCATCAAGACTGGCAGGCGCATGGACGCAAAGAGGTGTTGGAAGTATGTGGAAAAAATGCTCCGGATGCAGATAGCGTGAATCGTCTTAAGATTGTGGGAATGATTCTAAATGAGGCCCTCAGACTTTACCCACCAGCAGTGTTTCTGCGACGACATACATGCAAACCAATGAAGCTTGGAAGGCTCTCAATTCCTGCAGGCATTGATCTTATGCTTCCAATCCTTGCAATCCACCATGATCCATCGTTGTGGGGAAATGATGCAAAAGAGTTTAACCCATCACGATTTGGTGAGGGAATTGCAAAAGCGCATTGCATCCATTCGCATTCATGCC

Fln Alignment:

biogeco3_mira_c4938___DLLGLMMSAKNA------QDVRMTMEEIVDECKTFYFAGHETTANLLTWTMVLLGMHQDWQAHGRKEVLEVCGKNA-PDADSVNRLKIVGMILNEALRLYPPAVFLRRHTCKPMKLGRLSIPAGIDLMLPILAIHHDPSLWGNDAKEFNPSRFGEGIAKA
A9NWW9__________________DLLGLMMSAKNKRVGGKLQDVRMTTEEIIDECKTFYFAGHETTSILLTWTIILLGMHQDWQDRGRKEVLEVCGKNVVPDADSVNHLKIVGMILNEALRLYPPAVFLQRQAVKPMQLGRLSIPAGTQLLLPILAIHHDQCLWGNDANEFNPARFSEGIAKA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
206		33		66	0.997453
234	33		66		0.997452
297		66	33		0.997476
300		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain