SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13759

Length: 419 nt

UniGene Fasta

>biog3_v1.0_unigene13759
GATCTTCCAATAACAACAATGAAGGAAGAGCCAAAAGATGAAAAGGGAGATGAAACAAACAAGGAAGAAGTTGAGCAAAATGGGAATAATGACAAGATGCTCAAAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAATAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGGACAATGAGAAATGTTCCTGTAGGCGCTGGACGACGCAAGAACAAACATCCAGGTACACATTATTGGTATACAATGAAGTCTGTTGGCCTTACACCTGCTATAACTGGATCCTCTGATGCTGCCCACCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGACATT

Ace file of the UniGene biog3_v1.0_unigene13759

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1959	2/4
SustainPine v2.0	sp_v2.0_unigene70120	2/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SWI/SNF complex subunit SWI3B [Arabidopsis thaliana] sp\|Q84JG2.1\|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B gb\|AAO42112.1\| putative SWI/SNF complex subunit SW13 [Arabidopsis	-	-	1.0e-39	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	swi snf complex subunit swi3b	-	-	0.0	55%

Source	GOs	Term	Type	Identity
Blast2go	identical protein binding	GO:0042802	Molecular Function	55%
Blast2go	DNA binding	GO:0003677	Molecular Function	55%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	55%
Blast2go	nucleus	GO:0005634	Cellular Component	55%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWA4

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 139 - 447

Fln protein: DLPITTMKEEPKDEKGDETNKEEVEQNGNNDKMLKKTDKLLRCPRCDSSGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHPGTHYWYTMKSVGLTPAITGSSDAAHHSGFVLCPKCYENGNYGT

Protein Length: 140

Fln nts: GATCTTCCAATAACAACAATGAAGGAAGAGCCAAAAGATGAAAAGGGAGATGAAACAAACAAGGAAGAAGTTGAGCAAAATGGGAATAATGACAAGATGCTCAAAAAGACTGACAAGCTGTTACGTTGTCCTCGCTGTGATAGTTCAGGCACCAAGTTCTGCTATTACAATAATTACAATGTGAATCAGCCTAGGCATTTCTGCAAAGATTGCCAGAGATACTGGACTGTTGGAGGGACAATGAGAAATGTTCCTGTAGGCGCTGGACGACGCAAGAACAAACATCCAGGTACACATTATTGGTATACAATGAAGTCTGTTGGCCTTACACCTGCTATAACTGGATCCTCTGATGCTGCCCACCATTCAGGTTTTGTGCTGTGTCCAAAATGTTACGAGAATGGAAATTATGGGACATT

Fln Alignment:

biogeco3_mira_c4929___DLPITTMKEEPKDEKGDETNKEEVEQNGNNDKMLKKTDKLLRCPRCDSSGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHPGTHYWYTMKSVGLTPAITGSSDAAHHSGFVLC
A9NWA4__________________ELPVTAMEEESKDEKGDETNKEEVEQNGNKDKLLRKTDKLLRCPRCDSSGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHLGTHYWHTMKSVGLTPARTGASDAAHYSGYPQC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain