SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13748

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene13748
TTTATGGCAATGTAGGGAAACTTCTTCTATCACTGGAATCGGTCTTTTTTGATGTACTATTCCTACTGCAGCATTATTTGCTGTATCCCAAAACAAAAGTGGAAGATGGGACTGCTGGTGAAAACGTAGAACGGCTTCTAAACAAACCACCCAAGGAGAGTGATCACGAAGTTTAAGTGTTCTAATGCATTATATAACTGTAATTCGATATGTAGCTTATCAATTGTGCCTTAACTAGGCATAACCATTCTGAAATACAAGTCCATTCCTCCCGCTTCTTAGCCTCTCGCAATTGTGATAATTCGTTTCACTTATTTTAAGTATGGCCACAACCAATTATATGGATTAC

Ace file of the UniGene biog3_v1.0_unigene13748 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16510	3/5
SustainPine v2.0	sp_v2.0_unigene63993	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	cystinosin [Arabidopsis thaliana] sp\|P57758.1\|CTNS_ARATH RecName: Full=Cystinosin homolog dbj\|BAB08539.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK97727.1\| AT5g40670/MNF13_190 [Arabidopsis thaliana] gb\|AAL31135.1\| AT5g40670/MNF13_190 [Arabidop	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	cystinosin homolog	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystinosin/ERS1p repeat	IPR006603	-	0.0	-
Sma3	Lysosomal cystine transporter	IPR005282	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRH3

Fln msg: your sequence is shorter than subject: 58 - 272

Fln protein: YGNVGKLLLSLESVFFDVLFLLQHYLLYPKTKVEDGTAGENVERLLNKPPKESDHEV*

Protein Length: 59

Fln nts: TTTATGGCAATGTAGGGAAACTTCTTCTATCACTGGAATCGGTCTTTTTTGATGTACTATTCCTACTGCAGCATTATTTGCTGTATCCCAAAACAAAAGTGGAAGATGGGACTGCTGGTGAAAACGTAGAACGGCTTCTAAACAAACCACCCAAGGAGAGTGATCACGAAGTTTAA___GTGTTCTAATGCATTATATAACTGTAATTCGATATGTAGCTTATCAATTGTGCCTTAACTAGGCATAACCATTCTGAAATACAAGTCCATTCCTCCCGCTTCTTAGCCTCTCGCAATTGTGATAATTCGTTTCACTTATTTTAAGTATGGCCACAACCAATTATATGGATTAC

Fln Alignment:

biogeco3_mira_c4885___YGNVGKLLLSLESVFFDVLFLLQHYLLYPKTKVEDGTAGENVERLLNKPPKESDHEV
A9NRH3__________________YGNIGKLLLSLETVIFDVLFIVQHYVLYPKTKVEDGTAGENVERHLNKPLKESDHEV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
62		33	66		0.997476
81	33		66		0.997476
121	33		66		0.997471
150	20	80			0.995493
151	80			20	0.995493
174		20		80	0.995493
177	80	20			0.9955

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain