SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13718

Length: 452 nt

UniGene Fasta

>biog3_v1.0_unigene13718
AATGTTTTATGTTTTGTTGTATTTGGCGGGGTGAAAATAATCAACAAGGTTGCACCAGCTTTCCTTATTCCTGTTCTGTTATCACTATTCTGCATTTTTATTGGCATATTTGCCTCCCCAGGTCATCATGATAAATCAAAAATTACTGGATTAAGATGGCATACGTTCAAGCATAACTGGAATTCAGAGTACCAGCGCACCAATCGAGCTGGTATTCCTGCTCCAGATGGATTAATTTATTGGAATTTTGAGTCATTGCTGGGACTTTTCTTTCCTGCTGTGACTGGCATTATGGCTGGTTCAAATCGTTCTGCATCCTTAAGAGACACTCAGCGTTCAATACCTATTGGAACATTGGCAGCAATTGGTACTACTACTGCTATGTATTTGGTTTCTGTATTGATGTTTGGAGCTGTAGCCACAAGAGAGGCACTTTTAACAGACAGGCTTCT

Ace file of the UniGene biog3_v1.0_unigene13718

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2153	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-chloride cotransporter 1 n=3 Tax=Poaceae RepID=CCC1_ORYSJ	-	-	75%
FL-Next	sp=Cation-chloride cotransporter 1; Oryza sativa subsp. japonica (Rice).	-	-	75%
Blast2go	cation-chloride co-transporter 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	87%
Blast2go	sodium ion transport	GO:0006814	Biological Process	87%
Blast2go	chloride transport	GO:0006821	Biological Process	87%
Blast2go	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	0.0	-
Sma3	Amino acid permease domain	IPR004841	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Z0E2

Fln msg: Distance to subject end: 551 aas, your sequence is shorter than subject: 150 - 989

Fln protein: NVLCFVVFGGVKIINKVAPAFLIPVLLSLFCIFIGIFASPGHHDKSKITGLRWHTFKHNWNSEYQRTNRAGIPAPDGLIYWNFESLLGLFFPAVTGIMAGSNRSASLRDTQRSIPIGTLAAIGTTTAMYLVSVLMFGAVATREALLTDRL

Protein Length: 151

Fln nts: AATGTTTTATGTTTTGTTGTATTTGGCGGGGTGAAAATAATCAACAAGGTTGCACCAGCTTTCCTTATTCCTGTTCTGTTATCACTATTCTGCATTTTTATTGGCATATTTGCCTCCCCAGGTCATCATGATAAATCAAAAATTACTGGATTAAGATGGCATACGTTCAAGCATAACTGGAATTCAGAGTACCAGCGCACCAATCGAGCTGGTATTCCTGCTCCAGATGGATTAATTTATTGGAATTTTGAGTCATTGCTGGGACTTTTCTTTCCTGCTGTGACTGGCATTATGGCTGGTTCAAATCGTTCTGCATCCTTAAGAGACACTCAGCGTTCAATACCTATTGGAACATTGGCAGCAATTGGTACTACTACTGCTATGTATTTGGTTTCTGTATTGATGTTTGGAGCTGTAGCCACAAGAGAGGCACTTTTAACAGACAGGCTTCT

Fln Alignment:

biogeco3_mira_c4759___VLCFVVFGGVKIINKVAPAFLIPVLLSLFCIFIGIFASPGHHDKSKITGLRWHTFKHNWNSEYQRTNRAGIPAPDGLIYWNFESLLGLFFPAVTGIMAGSNRSASLRDTQRSIPXXXXXXXXXXXXMYLVSVLMFGAVATREALLTDRL
Q6Z0E2__________________LLCFIVFGGVKIINKVAPAFLIPVLFSLLCIYLGVFIAPRHNAPKGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLSATLTTTAMYLFSVLLFGALATREELLTDRL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
121			66	33	0.997453
310	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain