SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13702

Length: 382 nt

UniGene Fasta

>biog3_v1.0_unigene13702
AATGTATGAACTGGTCCGCGGTGCCATATTCAAATTCGTCAGTTTCGTTTCTGCAGAGACAGCTACAGATTCTGTTGGCTCATTGGTTATCATCCATATAACTGCATGGCACCACGTTTAATAAATTTATTGCATCCTTTGAATAGGATGCTTGGAAGAATTGAGTTATCACCTGGGTTGCTTGGATCACTAAAGCAAGGATACTCTACTGTTGGTTACGAACCTAATGAGGAGGAGGGAATTGAAGATGCCAAGCAGAGTGAACAACCTCTCCGGAGAGAGTCACAGCCGCAGAGTGTAGATCCCAAGAAGGGATGGGGTTTTCGTGGTGTTCATAAGGCAATTATCTGTGGAAAAGTGGGAACAACCACCAGTACAGAAA

Ace file of the UniGene biog3_v1.0_unigene13702

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8797	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Single-stranded DNA-binding protein [Arabidopsis thaliana] sp\|Q84J78.1\|SSB_ARATH RecName: Full=Single-stranded DNA-binding protein, mitochondrial; Flags: Precursor gb\|AAO42186.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50548.1\| unknown protein [Arabi	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	single-stranded dna-binding protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	76%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	Primosome PriB/single-strand DNA-binding	IPR000424	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS43

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 92 - 207

Fln protein: MAPRLINLLHPLNRMLGRIELSPGLLGSLKQGYSTVGYEPNEEEGIEDAKQSEQPLRRESQPQSVDPKKGWGFRGVHKAIICGKVGTTTSTE

Protein Length: 93

Fln nts: AATGTATGAACTGGTCCGCGGTGCCATATTCAAATTCGTCAGTTTCGTTTCTGCAGAGACAGCTACAGATTCTGTTGGCTCATTGGTTATCATCCATATAACTGC_-_ATGGCACCACGTTTAATAAATTTATTGCATCCTTTGAATAGGATGCTTGGAAGAATTGAGTTATCACCTGGGTTGCTTGGATCACTAAAGCAAGGATACTCTACTGTTGGTTACGAACCTAATGAGGAGGAGGGAATTGAAGATGCCAAGCAGAGTGAACAACCTCTCCGGAGAGAGTCACAGCCGCAGAGTGTAGATCCCAAGAAGGGATGGGGTTTTCGTGGTGTTCATAAGGCAATTATCTGTGGAAAAGTGGGAACAACCACCAGTACAGAAA

Fln Alignment:

biogeco3_mira_c4716___MAPRLINLLHPLNRMLGRIELSPGLLGSLKQGYSTVGYEPNEEEGIEDAKQSEQPLRRESQPQSVDPKKGWGFRGVHKAIICGKVGTT
A9NS43__________________MAPRLVNLLHPLNRMLGRIESSPGLLGSVNPGYCTVGCESNGEEAIEDVKESEQTLRRESQPQGVDPKKGWGFRGVHKAIICGKVGQT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
133	33	66			0.997464
137		66		33	0.997464
233	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain